Tjap019401.2
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065955.1:4443094-4461972[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0063 0.4 11.5 1.1 1 23 343 365 343 365 0.98 2 13 0.0063 0.4 11.5 1.1 1 23 402 424 402 424 0.98 3 13 0.02 1.3 9.9 1.7 1 23 461 483 461 483 0.98 4 13 0.014 0.9 10.4 10.3 1 23 490 512 490 513 0.94 5 13 0.77 49 4.9 2.0 1 23 517 539 517 539 0.97 6 13 0.11 6.9 7.6 2.0 1 23 544 567 544 567 0.97 7 13 0.021 1.4 9.9 0.2 1 23 571 594 571 594 0.91 8 13 6.7 4.3e+02 2.0 0.5 3 21 608 626 607 631 0.88 9 13 1.6 1.1e+02 3.9 0.4 2 23 684 706 683 706 0.94 10 13 0.01 0.67 10.8 0.7 2 20 722 740 721 743 0.91 11 13 0.00012 0.0077 16.9 1.0 1 23 749 771 749 771 0.98 12 13 1.7e-05 0.0011 19.6 3.1 1 23 778 800 778 800 0.97 13 13 4.1e-05 0.0026 18.4 1.3 1 23 806 829 806 829 0.95
Sequence Information
- Coding Sequence
- atgcgTTGTTGCGTCGCTGGTTGCAAGAATGATTCCAGACACATCTCAAAATCACAAGGGATTACATTTCACGTATTCCCCAACGAGCCTACCCTACGCACAGCATGGCTCCAGGCTCTGGGCAAGGTGGACTGGACCCCGAAAGAGCGGAGTGCAGTGTGCTCCGATCACTTCCTGTGCGAGGACTTGTATGAAACTAAAAGTGGCTTGAGGAAAGTTAAAGTGGGAGCTGTACCGTTTATATTAcagGATACAAGCACTTGTGATTATGGGGAGCCGGCTAGTTTGAAAGTGTGTAGAGTTTGTCTCGTGATGGACTGCAAGCTGTTCCCAATAAGCGTTTACAATCTCAAGCAAGCGTATGAACATCTTACTGGAGTGACGGTGTGTGCAGAAGAGAAGCTGCCCCAGAAATTGTGTTACGAGTGCGCTGCCAGACTGGTGAACAGCTACAAGTTCAGAACGAAGTGTTTGCGGGCCAATTCACTTATGCTGGAAATTCTTAGGAAGCAGCGAGAGCTAActctacaaaacataaaaacgatAAACAGAGAGAACAACCAGCTGTCATCCCCGCTCATCCCCAAATTCTACCAAGTTGACCACTACGACCAGCACGTTGACTACGACCAGCCCAAAATAGAAGAAGAAGTGAAAGAGATCAAACGGGAAGAAAACGAGATATATATCGCTGAGGGGGAGGAAATTGCACCGGTGGAGGcagaggtaCAAAATGATCTTATAGCAGATAATGTCTCAGAGAAGAATTACTCAAGCGATGACAGCTTACCGTTGGAAAAGACCAAGAAAAGGAAGAAACGAAAAATTGAGAAGAAAGAAGTGGTTAAAGTTAGAAAGAAACAGataAAACGCGATCCAGCCGAGCCCAAGATCGACCGTCGCAGGAAACCCTTCCTGAACGACGACCTCAACGAGACTCTGTTCACTATAACAGACTTAACCTTCGAAGAGCAAGTGGCGGAGATTGTGAAGAGACAGGACAGCGCTAACTATAAAAACGCGGTGTTTAAGTGCACAGAGTGTTTTAAGGGGTTCTTGGACGAAGACGCTTATAACACGCACATGACGAGGCACACCACTTCCCTCAACGAGACTCTGTTCACAATAACAGACTTAACCTTCGAAGAGCAAGTGGCGGAGATTGTGAAGAGACAGGACAGCGCTAACTATAAAAACGCGGTGTTTAAATGCACAGAGTGTTTTAAGGGGTTCTTGGATGAAGACGCTTATAACACGCACATGACGAGGCACACCATTTCCCTCAACGAGACTCTGTTCACTATAACAGACTTAACCTTCGAAGAGCAAGTGGCGGAGATTGTGAAGAGACAGGACAGCGCTAACTATAAAAACGCGGTGTTTAAGTGTACCGAGTGTTTTAAGGGGTTCTTGTATGAAGACGCTTATAACACGCACATGACGAGGCACACCACTCAATGCGGCGAGCACTCGTGCGAGATATGCAAGACGCACTTCAAGCACTCGCACGCGCTGCGCAAGCACATCACGGCGCACCACACGCAGCGCTTCAGCTGCAACCAGTGCGTGTACGTCACCACGCACCGCCAGACCGCGCGCCTGCACGAGCGCTGGCACAAGGGCACCAAGTACCGCTGCCCGCACTGCCAGGACGAGTTCGTTAAGTTTACGACGTACATGGGTCACATACGCATCAAGCATCCTTCAGACTTCGTGTGCGAGTTGTGTGGGTACTCCTTCGTGAGTATCAAGGGTATAGAGCTGCACAAGAAGCTGAAACACAGGCTCGAAGACGGACAGgtGCCAGAAGACGGTCCTTTCTGTGAGCTGTGCAATGTCAGATTTGTGTCAATAGAGGCTCATAGGAGACATCTGAACGTGTCTGGAAGACATACGGATAAAGAAGGCAGAGAAGCGAACAAACCGAAAAAGGGACGCAAATCGAAAGAGACGAAAGAACGGGAGAAGAGATCTCGGGAGAAGAGCAGAGAATCAGAGGACAAACGGAAAGTGTATCCTAGTCAATTGAGGAAGGCGGAGGGACCTATACCTTGCGAACAGTGTGGGCTACAACTAGAAGATTCCCGGGCGTATCACGGCCACTTCAGGAGAATGCACCCCGACAAGAACCGAACCAAGTACCCGTCCATGAAGAGTCCTTGCATGTGTGAAGTGTGCGGCAGGATGTTCCAGAGCTACGCCCTGCTGAAAGACCACCGCTGGGTCCACACGGGCGAGCGGCCGTTCAAGTGCGACGCGTGCGACAAGTCGTTCCGAATGAAACAGCGATTAGTCGCGCATCGCAGAGTGCACAGCCAGATGAAGATCTCGTACGCGTGCTCGCTGTGCGGGAAAAACTTCTCCACGCACAGCAACAGGCAAAGGCATATGTTTATCCACACAGGACTCAAGCCGTTTAAATGTGAGATGTGCGGGAAAGGCTTCAAGCACGCCAGTGAGAAGCGAGCTCACATCACATATGTGCATTTGAAGAAACCCTGGCCGAAACGGACTAGGGGGAAACGACGGAGCGACAGCAGACAGGGCATGCTACCACAAGGCCCCACTGGTACCGACATGGACGCAGTGCAACCAATATGGCCGCCTTGCGAACCCAAAATGGCCGACGTGAATATGATTGAAGACAAACCAATGTACTACACGTTAAAGATATAG
- Protein Sequence
- MRCCVAGCKNDSRHISKSQGITFHVFPNEPTLRTAWLQALGKVDWTPKERSAVCSDHFLCEDLYETKSGLRKVKVGAVPFILQDTSTCDYGEPASLKVCRVCLVMDCKLFPISVYNLKQAYEHLTGVTVCAEEKLPQKLCYECAARLVNSYKFRTKCLRANSLMLEILRKQRELTLQNIKTINRENNQLSSPLIPKFYQVDHYDQHVDYDQPKIEEEVKEIKREENEIYIAEGEEIAPVEAEVQNDLIADNVSEKNYSSDDSLPLEKTKKRKKRKIEKKEVVKVRKKQIKRDPAEPKIDRRRKPFLNDDLNETLFTITDLTFEEQVAEIVKRQDSANYKNAVFKCTECFKGFLDEDAYNTHMTRHTTSLNETLFTITDLTFEEQVAEIVKRQDSANYKNAVFKCTECFKGFLDEDAYNTHMTRHTISLNETLFTITDLTFEEQVAEIVKRQDSANYKNAVFKCTECFKGFLYEDAYNTHMTRHTTQCGEHSCEICKTHFKHSHALRKHITAHHTQRFSCNQCVYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSIKGIELHKKLKHRLEDGQVPEDGPFCELCNVRFVSIEAHRRHLNVSGRHTDKEGREANKPKKGRKSKETKEREKRSREKSRESEDKRKVYPSQLRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFKCDACDKSFRMKQRLVAHRRVHSQMKISYACSLCGKNFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRTRGKRRSDSRQGMLPQGPTGTDMDAVQPIWPPCEPKMADVNMIEDKPMYYTLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429076;
- 90% Identity
- iTF_01430005;
- 80% Identity
- iTF_01430005;