Tjap017231.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065950.1:1071456-1074416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0071 0.45 11.4 1.1 1 23 249 272 249 272 0.94 2 18 4.2e-05 0.0027 18.3 2.9 1 23 277 299 277 299 0.99 3 18 7.1 4.6e+02 1.9 0.5 2 23 303 324 303 324 0.87 4 18 0.031 2 9.3 0.4 1 23 329 352 329 352 0.93 5 18 0.0019 0.12 13.1 0.9 2 23 413 435 412 435 0.96 6 18 5.4e-05 0.0035 18.0 1.5 1 23 441 464 441 464 0.94 7 18 0.02 1.3 9.9 0.4 3 21 469 487 468 488 0.94 8 18 0.41 26 5.8 0.1 3 19 498 514 496 514 0.97 9 18 1.1 68 4.5 0.2 1 23 524 547 524 547 0.77 10 18 0.0031 0.2 12.5 0.2 2 23 560 581 559 581 0.95 11 18 0.32 20 6.2 3.6 1 23 587 609 587 609 0.98 12 18 8.5 5.4e+02 1.7 0.2 2 9 614 621 613 623 0.87 13 18 0.00011 0.007 17.0 2.6 1 23 644 666 644 666 0.96 14 18 9.2e-05 0.0059 17.3 0.1 2 23 670 690 669 690 0.96 15 18 1.1 73 4.4 3.2 2 23 704 726 703 726 0.96 16 18 0.013 0.86 10.5 3.5 3 23 734 754 732 754 0.97 17 18 0.00013 0.0083 16.8 4.8 2 23 761 782 760 782 0.96 18 18 0.0012 0.079 13.7 1.4 1 23 788 811 788 811 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAGACAATAGAAATCCACGCGAGTCAGGAACCGATAAAGCCTCCAACAAACTCTGAGAAGGCTCAAGTGGAATGGCTGAAGGAGAAGTTATTGTGCCTGTGGGATTGCACACAATTCTGTGGGATGTGTCTGGATAATACCAGGAGTCTCAACCCACTCGATAAAGAGTTTGTGATTGGCAGACAGAAGGACTCACAGTCACTGCTGGATATATTGAATTATGTGTTTAATGATGATATTGAAACCATAATGGCGAGCACTCTATTATGTGACACATGCACCGAAAAGACCCTTCAGTCATATCTCTTCATAAGAAACACCAAGTTGCtatcaaaaattgtaaataactgTGTTATGGACATATACTGCAAAGCTGTTGATGTCAGCGAGCAAGTCCTAGACAGTTACATGTGTGAGAATGCCAACGTAATGATTGTTTTAGAAAATGATGTGGAAATGTTTGATGAAATTGAGGATCTTATAGCTGTCACTGAGATAATACCCACAGACCAGCGGATTACTGCGAAACATTATGATACGGAACCTGAAACTTACACAGAACCTATAGAAGAACCAGTTAAAGAAACATCACCTCCCTTAACACATAAAATAGATGAAATATTCTTGCCGAAAGTTCTGAAGTCAGAGGGAACACCAAATATAACACTGGAGAAAGGCAAGCTGGTTATTAAGCCGATAAAAACTCTTACACCCAGATCTAAGCCAACATATACTACTTACAAGTGTAACCAATGCCCGGATATATTTACAACATACAGATCATTAAAAGAACATGAGAAAGCTAAGCACAAGTTCCAAATCTTCAAGTGTAGGCTCTGTGAGAAGTCATACAATACACAGCAATCCTTAAATGTTCATTACAAGACTCACTCGAAAGCCCGGTGCAAGATTTGCCAAATATTACTTAAAGAAGAAGAGCTATTTGCACATTTAAGACAAAATCATCCGAACCTTGTGTATCCTTGCAAATTCTGCGAGCTTGTATACTACACCCAAGAAGCTTTGGATACGCATTTTAAAGCTAGTCATTTGGTTAATGACACATCTGCAAAGTCTCAATGTGTGATGTGCTTGAAAGAAATTGGCAAAGAAGATTTGAAGGTTCATAAATGCAAGTTTAGTTGCCCTGACTGCTTTATTATGCCATGCATACATTACAATTACTTGGTATCATACAGGCAGCAGGTTTTGAACCATGCAGCTAAGATAAGCTGCACTGATTGTGATTATGTTACACATAGGAAAGAGTATCTTATTACTCATGTGAATAGGGAGCATTTGGATCACCATCCTTTCACTTGCAATGACTGCGGGATGCAATTCTACACAAAAATGAGCTTGAAAACCCACATTGATCAATACCACATTGACAATATTTGTGAATATTGTGACACTGAGTTTAAAAAACGGAATGTTCTAACAGATCACCGGAAATCTTGCAAAACGAGTATCAGAGCGTTTGGTTGTGAAAAATGTCCGGCTTCATTCGATTTAGAGGAGGAACTTACTAAACACGATTTCCTTAGGCACGGTGACGGAGGATACGCTTGTAAATTGTGCAACAGGAGATTCTTAGAAGAATTACAGTTAGATGAACATCAAGTGACTGCACATAGCAGTGTGCAATGCAAGAAGAGACGGAAAAATATCGAGTGCACACTATGCGATGTGAAATTTAACAATGTGAAGGAATTGGAACAACATCAAGATTTGCATGGTGCGGACACAGTGTATCCTTGTAGAACGTGTTTAAAAGAATACCACAGTTTGAAAAAGCTGTATGTACATCAACAAAGACATTATGACAGAATACAGTGTCCGGGATGCAAGAAAAGGGTTATTGTTGGTTTCTACCCTCAACATGCGGTCCGTTGCCTATACAACCGAGACAGTGGAATGTCACACATATGCGAAATATGTGGCAAGTCGTTCCATTTAGAATCACTATTGAAAATCCATCAAAAGAATCACGAAAAGATAGTATGTTCGGAATGCGGCAAGACTGTTAAAGCATCTAACTTAGAAAAACATATGAAAGGTCACAATAAGTTTGGGCCTGACAAGAAAGTTATTCCGAAGGTGCAATGTAACTTATGCGGTCATCTGATGAGAAAGAAATGCGATTTGGATGCTCACATGAATAGGTATCACTTGAAAGTGAAGCCGTATGGATGCCACATTTGTTCCAAAAGATTTTGTGGTAAAATTAGGCTCACTGAACACTTGGCGACACACACATCAGATAACGAATGTTTCTGCTCAATATGCGGAAAGAAATTCGCCAATAGAGTGTGCTTGAAAATGCACTTACGAATCCATACCGGGGAATGTCCATACACATGTGACGTTTGCGGAGAGAAATTCAGATCATCGAGCATTATGAAGACCCATAGACTTAAGAAACATTTAGAAAAAACTGTTGCTTGTCCGTCTTGTGATAGTATGTTCCACATCGTAAGAGAAATGAGACATCACTTCAAGCATGTGCATTGGAAGGATAAAAACAGGCCGTTTAATTACAAAGAAGCTGTGCCAAAGGAATACTACCATTTGTTTGAAGATGGCAGACTGCCTAAAATCGATTCTGAAGTGGTCATAGAATCCTAG
- Protein Sequence
- MEETIEIHASQEPIKPPTNSEKAQVEWLKEKLLCLWDCTQFCGMCLDNTRSLNPLDKEFVIGRQKDSQSLLDILNYVFNDDIETIMASTLLCDTCTEKTLQSYLFIRNTKLLSKIVNNCVMDIYCKAVDVSEQVLDSYMCENANVMIVLENDVEMFDEIEDLIAVTEIIPTDQRITAKHYDTEPETYTEPIEEPVKETSPPLTHKIDEIFLPKVLKSEGTPNITLEKGKLVIKPIKTLTPRSKPTYTTYKCNQCPDIFTTYRSLKEHEKAKHKFQIFKCRLCEKSYNTQQSLNVHYKTHSKARCKICQILLKEEELFAHLRQNHPNLVYPCKFCELVYYTQEALDTHFKASHLVNDTSAKSQCVMCLKEIGKEDLKVHKCKFSCPDCFIMPCIHYNYLVSYRQQVLNHAAKISCTDCDYVTHRKEYLITHVNREHLDHHPFTCNDCGMQFYTKMSLKTHIDQYHIDNICEYCDTEFKKRNVLTDHRKSCKTSIRAFGCEKCPASFDLEEELTKHDFLRHGDGGYACKLCNRRFLEELQLDEHQVTAHSSVQCKKRRKNIECTLCDVKFNNVKELEQHQDLHGADTVYPCRTCLKEYHSLKKLYVHQQRHYDRIQCPGCKKRVIVGFYPQHAVRCLYNRDSGMSHICEICGKSFHLESLLKIHQKNHEKIVCSECGKTVKASNLEKHMKGHNKFGPDKKVIPKVQCNLCGHLMRKKCDLDAHMNRYHLKVKPYGCHICSKRFCGKIRLTEHLATHTSDNECFCSICGKKFANRVCLKMHLRIHTGECPYTCDVCGEKFRSSSIMKTHRLKKHLEKTVACPSCDSMFHIVREMRHHFKHVHWKDKNRPFNYKEAVPKEYYHLFEDGRLPKIDSEVVIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429369;
- 90% Identity
- iTF_00820424;
- 80% Identity
- -