Tjap016234.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065948.1:16981112-16983324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 1.8 9.5 0.1 3 23 2 22 1 22 0.97 2 12 1.8e-05 0.0012 19.5 1.7 1 23 28 51 28 51 0.94 3 12 0.13 8.4 7.4 0.1 2 23 155 177 154 177 0.94 4 12 0.27 18 6.4 0.6 3 20 201 218 199 222 0.92 5 12 0.0047 0.31 11.9 0.1 1 23 227 250 227 250 0.94 6 12 0.25 16 6.5 2.4 1 14 255 268 255 278 0.77 7 12 0.007 0.45 11.4 1.8 2 23 283 305 283 305 0.92 8 12 6.8e-06 0.00043 20.9 1.1 1 23 312 335 312 335 0.98 9 12 0.0026 0.17 12.7 0.3 2 23 342 363 341 363 0.95 10 12 1.1e-06 7.4e-05 23.3 2.0 1 23 369 391 369 391 0.98 11 12 1.4e-05 0.00091 19.8 0.2 1 20 397 416 397 419 0.94 12 12 0.0022 0.14 12.9 3.5 1 19 425 443 425 448 0.94
Sequence Information
- Coding Sequence
- ATGTGCAGCATTTGCGGATGGGAGGGATTTGGAAAGACTAGTTTAGGTTTACACATGAGAAAGCACAGCGATGAAAGAAACTATCCGTGCCCTTCTTGTGATAAAGCTTTTAAAACCAGGAAGAATATGAGACAACACCACATTAATATCCACGAGAAAGTCGAGAAGGAAAGTGCCGAGTTGCCAAGAACGGACATTCTTGATTCATCTACCACTGTGACCGATATAGAACTGAGCAACGCAAAAGAACAATGGAAATTATTGTCAATCATCTTGAATAATTCAACGGCCGTACCTTTCCGCAGACACGGAAGTAGGCACAAATGCTTCTTCTGCGAGCGGTGTTATCTACATGCTACAGATTTGAGACAGCACACTACAAACAGGCATTTAGAACAAGAGCTTCTTGATCTTGAAAAGCACATCACGGAGCCCCTAATCAAGCTGGATGTAACAAATTTGATGTGTAAATTGTGTGCAGCGAACTTGGACAACCTCGACGAGTTgatcaaacatttaaataaacaacacaacAAAGGGTATCCTGACATTACTTCGCAAAGCAtcatgtgttttaaattaactgaTAAAGATTTCGGATGCTTGAGTTGCGGGAGGAcgtttaaattatttggaaCTTTACTACTTCACATACATTGTGAACATTGTAAGAGAAAACATGTTTGTGACGCATGCGGGCTGGATTTTGAAAGCAATGGAGATTTACTCAATCACACTCAACAAATACATTCTATTGGAGAATATGAGTGTCCGTACTGTTTTAAGAAATTCTTCAATGAACGCCGGCGAGACATTCACGCGAAACACTTACACGAATCCAGACGAAAATGCTTAATTTGCCACGAAACGTTCAAAAGTAAACAAGAGAGGGATCGACATATGTACGCGGCGCACTCACAGGAAATGCCGTGGTACAAATGTGACAAATGCCCCACGAGGTTCAAAGTCCAACGATTATTGGAAGAGCACCAACGGAGAGtacatttgaaagaaaaaaacgtAACTTGTGAGATTTGCGGCATGAGATTCTTTAGCACTGGATTGCTGAACCTCCATAAAGTTAGACATAGCGACGCTAAGCCTTATGAATGCGATACTTGCCACAAAAAGTTCCCTAGAAAGTCGGCAATGGAGCGGCACGTGAGGATTCATACGAATGAAAGACGGTACGCGTGTAAGATATGCGGGAAGGCTTTCATCCAATGGACAAGTCTGCAGTACCACCTACCGCAGCACAGTGACGAGAGGAAATTCAAATGTGTCGTTTGTGATAAAGCgtttaaaactaaaaagacAATGTTGAAACACTGCACTAATGTGCACGGAAAGGGAAAAGTCGTAGACACTGGTGGCTCATCAGAGGCCTGA
- Protein Sequence
- MCSICGWEGFGKTSLGLHMRKHSDERNYPCPSCDKAFKTRKNMRQHHINIHEKVEKESAELPRTDILDSSTTVTDIELSNAKEQWKLLSIILNNSTAVPFRRHGSRHKCFFCERCYLHATDLRQHTTNRHLEQELLDLEKHITEPLIKLDVTNLMCKLCAANLDNLDELIKHLNKQHNKGYPDITSQSIMCFKLTDKDFGCLSCGRTFKLFGTLLLHIHCEHCKRKHVCDACGLDFESNGDLLNHTQQIHSIGEYECPYCFKKFFNERRRDIHAKHLHESRRKCLICHETFKSKQERDRHMYAAHSQEMPWYKCDKCPTRFKVQRLLEEHQRRVHLKEKNVTCEICGMRFFSTGLLNLHKVRHSDAKPYECDTCHKKFPRKSAMERHVRIHTNERRYACKICGKAFIQWTSLQYHLPQHSDERKFKCVVCDKAFKTKKTMLKHCTNVHGKGKVVDTGGSSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -