Tjap014426.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065946.1:3152687-3156787[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.039 2.5 9.0 0.1 5 23 352 370 351 370 0.96 2 12 0.035 2.2 9.2 0.0 3 23 378 398 377 398 0.95 3 12 8.1 5.2e+02 1.7 0.2 2 21 406 424 405 427 0.66 4 12 2.2e-06 0.00014 22.4 0.6 2 23 433 454 433 454 0.97 5 12 0.00014 0.0093 16.7 2.2 1 23 460 482 460 482 0.98 6 12 0.0072 0.47 11.3 0.1 1 21 486 506 486 507 0.95 7 12 9.3e-05 0.006 17.3 0.2 1 23 540 563 540 563 0.96 8 12 0.61 39 5.3 0.1 3 23 572 592 571 592 0.93 9 12 1.9e-05 0.0012 19.5 0.4 1 23 603 625 603 625 0.98 10 12 7.5e-05 0.0048 17.6 4.5 1 23 631 653 631 653 0.98 11 12 0.00037 0.024 15.4 0.5 3 23 661 681 659 681 0.98 12 12 6e-06 0.00039 21.0 0.7 1 23 687 710 687 710 0.96
Sequence Information
- Coding Sequence
- ATGGAGATGGAAACTTCGTGGTCTAATTTCTGCCGGTGTTGCTTGTCGGCCGATTCCGAAGTGTCATTATTAGACACAGAGGAAAATATCAAAGAGAAATTCCGGGAAATAACCACGATTAAGgtTTGCCCTGACGATGGTCTGCCACAAAAGCTGTGCACAGAATGCTACTCCATAATGTTATCAGCTTACCAGTTCCGAAAGCAGTGCATCAGGATGGACTCGGAACTACGGTTACAACTTAACACTATACTCAGCCAGACCAGAGAGAAGACTTTAGAAGAACTGATCCAAGAAGCAGTAACTTATGAGCAACCCACTGATGAAGAGATAGCAAATGACCCAATAAAACAGTTAGAAGCTATCATCAAACAGGAACCAACAGATAGTGATGATGATTGTTACTATGTTGTGGTCATTGATGACCCCAAGGATAAGGAATCAAAAGAGAGTGAGCCTCAACTGCACGCTAGTATCAAGAATGAACCAGAAACTATCGTGCCACATCAAGATATAAATATGTCCCAAATAGTCGAGGTACCACAATACAGTCacaatcattttgaaaaaaccATTGACGATTTTCTAATGTCCAACACAGTGTCTGCAAATGTACCTGCCACTATACTGGAGAATGAAGAGGAGTGCCAAGATGATATGGAGACTATGAATGTAGAAGAAATTCAAGACATTACATCACAAGATGAAAATCTACAACACATTGCAGGGGATGGAGTAGAAGAAATAATTGGAGACATGTCAGGTAACATAGATCAACATccaaaaaactttattaaaatactatcaACAAACTCTGATGGTACTATATTGTTGAAAAGTACCGATGACATACAGTATTTGACAGACACACAACTAGTGGCAAATGAGAATGAAGATGGAGATACAATGGACCAGGAAGTAATTCTTTGTGAAGGAGATGATTCATCACAGTTTCAAATAGTGAAATATGATGGATCAGAACTTGTTATAGAGTATGCTGATGACGGACAAATAGCTACTGTCTTGCAACAAGAAGATGGCACATTTCTATGTGACTGCGGAGAACAGTTTGAAGACTTAGCTGAGTATGAGAAGCATCAATATAAACACAATCCTGCCGGGGAAAACTTGTGCAATTTGTGTGGCAAAGGGTTTGAATCACCTGAAATCTTAGTAGGTCATATGCTTTTGCATAAATTTACAGGTGTTTTAATTACTTGCCCCTACTGTAACCAATTAATTAAGAGGACTGCAATCACGCAACATATCAAATATgcacacaataatattaaaccacGATGTAATATATGCTTGAAGACTTTCGCAAAtccaaataatttgaaaaggcATCTGATGATCCATAGTGGTATCAGAGAGTTTGAATGTGATGTCTGTTTCAAAAGATTCAGTCAAAAAATTACGATGCAAACACATCGGCTGACACATATGAACCCATTCACTTGCAACAGTTGCGACAGCGAATTCGACAACAAAGCTGCTTTGACAGAGCATCAGGAGTCTGGGGATTGCACCCGGGCCAAAGTAATGAAAGTCAAGGAGGAGTTGATGAAGACTATCAAGCAGGAAGTGACCACAAATCTTGGCAAACTGTTGGGCTACGCCTGTTCTCTATGCAAGAAAATGTTTTCAGTTGAATCTGCATTGGAACAGCACGTGGAGACAACACACATAGTCGATCCTGCCGAGTTGCTCTGCTCGGAATGTGGCGAAGTACTACCGTCCAAGAAAGATATGCAATTCCATGTATTATCGCATAAAAACATGAAGCCAAAGAACCCTAAGAGATTTGAATGCAGCATTTGTGGTAAGAGCTGCCCCAGTCAGGCGATGCTGCTTATGCATGAACGAGTGCACACAAATGAGAGACCATTCCCGTGTCAGCTTTGTTCGTTACGGTTCAAAACCAAAACGCATTTGAGAACACACCAGCTTACTCACACTAGAGAAAAGAAATTCGGCTGCTCGATTTGTATGAAATTCTTTTCGCTCAAAGGGAATTTGATAGTACATTTACGAACCCACACTGGGGAGCGCCCCTACGTGTGTTCAATTTGCGGAGAAGCCTTCATAGACTCCAAGTATCTTAAAAAgcataaattaaagaaacacgCTATAGACAATGTGCCGTGGAATCAGTACTAG
- Protein Sequence
- MEMETSWSNFCRCCLSADSEVSLLDTEENIKEKFREITTIKVCPDDGLPQKLCTECYSIMLSAYQFRKQCIRMDSELRLQLNTILSQTREKTLEELIQEAVTYEQPTDEEIANDPIKQLEAIIKQEPTDSDDDCYYVVVIDDPKDKESKESEPQLHASIKNEPETIVPHQDINMSQIVEVPQYSHNHFEKTIDDFLMSNTVSANVPATILENEEECQDDMETMNVEEIQDITSQDENLQHIAGDGVEEIIGDMSGNIDQHPKNFIKILSTNSDGTILLKSTDDIQYLTDTQLVANENEDGDTMDQEVILCEGDDSSQFQIVKYDGSELVIEYADDGQIATVLQQEDGTFLCDCGEQFEDLAEYEKHQYKHNPAGENLCNLCGKGFESPEILVGHMLLHKFTGVLITCPYCNQLIKRTAITQHIKYAHNNIKPRCNICLKTFANPNNLKRHLMIHSGIREFECDVCFKRFSQKITMQTHRLTHMNPFTCNSCDSEFDNKAALTEHQESGDCTRAKVMKVKEELMKTIKQEVTTNLGKLLGYACSLCKKMFSVESALEQHVETTHIVDPAELLCSECGEVLPSKKDMQFHVLSHKNMKPKNPKRFECSICGKSCPSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSICMKFFSLKGNLIVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHAIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00290911;
- 90% Identity
- iTF_00819406;
- 80% Identity
- -