Basic Information

Insect: Theretra japonica
Gene Symbol: -
Assembly: GCA_033459515.1
Location: CM065937.1:2423792-2433135[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.5e-06 0.00022 21.8 1.7 1 23 232 254 232 254 0.98

2 9 3.3e-08 2.1e-06 28.1 1.6 3 23 262 282 260 282 0.98

3 9 0.00011 0.0073 17.0 0.3 1 23 288 310 288 310 0.98

4 9 1.2e-05 0.00078 20.0 1.7 1 23 316 338 316 338 0.99

5 9 2.5e-05 0.0016 19.1 1.7 2 23 521 542 520 542 0.96

6 9 3.2e-09 2.1e-07 31.3 1.6 1 23 548 570 548 570 0.98

7 9 0.0027 0.18 12.6 0.6 3 23 578 598 576 598 0.97

8 9 7.1e-05 0.0045 17.6 1.5 1 23 604 626 604 626 0.99

9 9 0.022 1.4 9.8 0.8 1 23 632 656 632 656 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.5e-06	0.00022	21.8	1.7	1	23	232	254	232	254	0.98
2	9	3.3e-08	2.1e-06	28.1	1.6	3	23	262	282	260	282	0.98
3	9	0.00011	0.0073	17.0	0.3	1	23	288	310	288	310	0.98
4	9	1.2e-05	0.00078	20.0	1.7	1	23	316	338	316	338	0.99
5	9	2.5e-05	0.0016	19.1	1.7	2	23	521	542	520	542	0.96
6	9	3.2e-09	2.1e-07	31.3	1.6	1	23	548	570	548	570	0.98
7	9	0.0027	0.18	12.6	0.6	3	23	578	598	576	598	0.97
8	9	7.1e-05	0.0045	17.6	1.5	1	23	604	626	604	626	0.99
9	9	0.022	1.4	9.8	0.8	1	23	632	656	632	656	0.95

Sequence Information

Coding Sequence: ATGGACAGCTACTTACTTTTAGCGGTCGTGTATCTCGTGGTCCTACTAAAGATCTTCATTGAGTTTTTCCGCATTGATACGACAGCTCCATACGTTCTATACAAAGATGGCGTGGAGCGCGCACCGCCAGGCACCCAGTGGGGCGGCGGTGTGTTGGACGGCGGTTACCAGCCCTCCATGCAGCACCAGAGCCCCGGCGGGCCCTCGCCGCAGCCCGAGCCACAGCTGGCGTCGCCCGCGCCCTCGCCATACCCACCCGCGCCACCGCCTCCCGACCAGACGCCCGAAGACGCCGCGCAGCAACTCGCGCAGCAGCAAGCGCAGCAACAAGCTCAGCAGCAGCAGcaacagcagcagcagcagACGTCGCCAGAACACATGCAGGTGGAGCAGCAGCTCCAGCCGCAGCCGCAGCCCCCCACCCAGGACCACCTGGACCGCACCCCGTGCTTCGTACCGCAGCCCGACCTGCAGCAACAGTACACGCCCTACTTCAAGGAGACAAGGCCCACGAGCCACATGCTTGGCACTGGCGGCTTCCCGCTCCACTACCTGAAACAAAACGGTGGAGTGCTCTCGCTGGAGGGGCCGCTCGACCAGTACGGCGCGCCGGACCTTCGCCACCTGCCGGATATCGTCCAACCCGAACCGCCTAAACCGCGCAAGCATAACCCGAACTCGGAGCTGCGGCTGTTCAAATGCCTAACGTGCGGCAAGGACTTCAAGCAGAAGTCGACTCTGCTGCAGCACGAGCGGATCCACACGGACTCGCGGCCGTACGGGTGCCCGGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCACCTCACGCAGCACCTGCGCATCCACGCCAACGAGAAGCCCTACGCGTGCGTGTACTGCCCGCGCTCCTTCCGCCAGCGAGCCATCCTCAACCAGCATCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATGCCCCTCCCCGCCCTCCGCGCGCGCCGCCTGCACTGGTCGCGGCCACTGCCGGCGCCGCCCGCGCTCCCCGCCGCCCCCCGCACGTTCGATTCGGTCTCGCATCCATTGGCCTTCCTGTCGAACAAATTCTCGGTCCCCTCGTCTGCCGCCAGCCGGCTGGTGGAGGCGCCCGCGAGACGCGGAACCGACCGCCGGACGATCCCGTAACCGTCCTCAACGTGTCGCCGCATCTCATATTCAAGAATGGGACAACGCCGACCCTGTGGCCGCAGGACGTACCATTCCCTCCTGACGAGAACAAAGAAGAGGTGCAGTCCACGTTCGGCGACAATGATGGCCAGAACGGTGAGCAACGCGGCTCGTGCTTCTCGCCCGGAGACACTGCACAGTATCCAGCTTACTTCAAGGACACCAAGGGtctcaatcataccgtatttgGTTCTGGACTTTCGCTACAATATTTGAAGGGAGGTAAACTACCTGACGTGCTCGGCGGACGAGCGATGCCGCTATATGTCCGCTGCCCTATTTGCCAAAAAGAGTTTAAGCAGAAGTCAACGTTGCTGCAGCACGGCTGCATCCACATCGAGTCCCGGCCTTACCCGTGCCCCGAATGCGGCAAGCGGTTCCGGCAACAGTCGCATTTGACGCAACACCTGCGCATACACACCAATGAGAAACCGTATGGGTGCGTTTACTGCCCACGTTTCTTCCGCCAGCGGACTATCTTGAACCAGCATTTACGCATCCACACTGGCGAGAAGCCATACAAATGCACGCAGTGCGGCAAGGACTTCAGACAGAAGGCAATACTGGACCAGCACACGCGGACGCACCAGGGAGACAGGCCGTTCTGCTGCCCAATGCCGAACTGCCGGCGACGATTCGCCACCGAGCCCGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGAGGCGCGCGGATGCATCGAAGACGCCGCGGCCGCTGCcgccggcggcggcggtggtgaAGCCAGAGCTGTACTTCCCACAGTGCTACGCGCCGCCGTTCCAGCAGTTCCCGCCAGGCGGCGCGGCGGAGTTCAAGCCGGCCGTAGGCCCGGGCGCGCCGGTGGCGTGCCTGCCGGCACAGTGA
Protein Sequence: MDSYLLLAVVYLVVLLKIFIEFFRIDTTAPYVLYKDGVERAPPGTQWGGGVLDGGYQPSMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDQTPEDAAQQLAQQQAQQQAQQQQQQQQQQTSPEHMQVEQQLQPQPQPPTQDHLDRTPCFVPQPDLQQQYTPYFKETRPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYGAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYAPPRPPRAPPALVAATAGAARAPRRPPHVRFGLASIGLPVEQILGPLVCRQPAGGGARETRNRPPDDPVTVLNVSPHLIFKNGTTPTLWPQDVPFPPDENKEEVQSTFGDNDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKRRADASKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPPGGAAEFKPAVGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00858795;
80% Identity: -