Tjap009174.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065938.1:13679974-13686495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.89 10.4 1.2 1 23 219 242 219 242 0.96 2 12 0.031 2 9.3 2.6 1 23 249 271 249 271 0.93 3 12 3.2e-05 0.0021 18.7 1.7 2 23 278 299 277 299 0.97 4 12 0.00029 0.019 15.7 0.1 1 23 305 327 305 327 0.97 5 12 0.73 47 5.0 6.0 1 23 336 358 336 358 0.92 6 12 0.0031 0.2 12.5 0.1 6 23 368 385 363 385 0.92 7 12 0.00034 0.022 15.5 8.1 1 23 391 413 391 413 0.97 8 12 4.4e-08 2.8e-06 27.7 0.3 1 23 419 441 419 441 0.98 9 12 2.9e-06 0.00018 22.0 0.3 1 23 447 469 447 469 0.98 10 12 3.2e-05 0.0021 18.7 1.0 1 23 475 496 475 496 0.98 11 12 9e-05 0.0058 17.3 0.2 1 23 502 524 502 524 0.98 12 12 2.4e-06 0.00015 22.3 2.0 1 23 530 552 530 552 0.99
Sequence Information
- Coding Sequence
- ATGGAtcataatactaaaatatgcacAGAAAATACTCGTAGCTTTGTAAATAATGACACCAATGAGGAATATTTCGAAATCAAAATCCCTTTACACTTGTTTCAATATCTTAGTGCAGAGAATTGTGATCTGCAGAATTTGTGCCGCATATGTTTATCCATAGAAAACGAGGTGATGTATCCGATGTGGCCCGCACAAGATAACAATTTGCTAGCAGAATTATACACATCCTTGACGGCCATATCAATTAGCCCAGATGATGGTTTGCCATCCAACATTTGTGCAGCATGCCAGGCTCAAATCAGCTACTACTGTGACTTCAAATCTCTCTGTGAGAGATCCAATTACACATTAAGATCTATACTCAAAGGCGACTTTACAGCCAGAGATGCTATACTGGAGAATAAAGTACCTCCACAGTATATACAAGAAACAGAAGATAGGAAGAATTTAAAGGAAGATACAGAATTAAATGAAGatattaaatatttagaaaatctGGATGAGATCCCAAGTGCAAATGATGATTTTTGCATTAAAGATAACATATCAAAATGTGGAcaagACCAGCTGATGTTTTCAGCAACAGATTCAAAAAGTCTGTTGAGTGAAGATCTTTCTCAAAATACAATACCACATAAAAGACGAAagaattatgtatgttcatTTTGTGGTAAGaattacttaaaattaaaagcacTTCGAACGCACATAACAAAGAATCATGTGTCGACTGATCTAGCGCATGAGTGTAATCAGTGTAAAAACGCATTTAATTCTGAACACGATCTGAAACTTCACTCCGCATTGCATACAAAAGGAACATCATGGAAATGCAACAAGTGTGACAAGGAATAcaattCAAAGCAAGTGCTGCGGCGCCACATCCAGCGGCACATGGAGGCGAAGCGGTTCGCGTGCGAGGCGTGCGGCAAGCGCTTCATGGAGCGGTACGCGCTGCTCCGCCACGCGCGCGTGCACACCGGCGAGGCGCCGCTCAAGAACCACCACTGCCAGCTCTGCGACAAGAGGTTCTCGTGCGCGCGGCAGCTggcggcgcacgcgcacgcgcacggtGGCGCGCGGCcctgcgcgtgcgcgtgcggcaAGGCGTTCCCGTCGCCGCGCCTGCTGGCGTCGCACGCGCGCGTGCACTCCGCGCACAAGCCGCACGCCTGCCACTACTGCGACAAGAGGTTCCGGCACGCGTCGACGCGCAACACGCACGTGCGCACGCACACGGGCGAGCGGCCGTACGTGTGCGCCGCGTGCGGGAAGTCCTTCATACAGAACTCCAACCTCACGCTGCACATGCGCACGCACACCGGCGAGCGGCCGTACTCGTGCGGCGAGTGCGGGCGCAAGTTCTCGTCGGGCTCCACGCTGAAGGCGCACGCGCGCAGCCACACGGGCGAGCGACCCTACAGCTGCACCGTGTGCGGGAAGAGGTTTGCGCGCATGAACATGAAGGCGCACATGCGCACGCACACGGGCGAGCGGCCGTTTGAGTGCAGCGCGTGCCCCAAGAAGTTCGTCAACGCGTCGCGCCTCAGGGAACACGCGCGGGTCCACACCGgtgAAAAGCCATTCCAATGTGCAATGTGTCCGCAAAATTTTCCTACGAAGTCCCATCTTATGAAGCACGTTAAAACTCATGAAACACACAAGAAATCTACCAAACGAATAATGGTGCGCAACCCTGAGATTCTAGTTTCTAACAAAATAGTGATCTCTGAGAAGACAGCAACCATTGAGGGACTAAAAACTGAAACTGTAACGGCTGAAGAAACTGCGTGTAGAATAGTAATTTTAGACGCAGAACAGGTACCATTAGAGGTACACCTAGCATGCTAA
- Protein Sequence
- MDHNTKICTENTRSFVNNDTNEEYFEIKIPLHLFQYLSAENCDLQNLCRICLSIENEVMYPMWPAQDNNLLAELYTSLTAISISPDDGLPSNICAACQAQISYYCDFKSLCERSNYTLRSILKGDFTARDAILENKVPPQYIQETEDRKNLKEDTELNEDIKYLENLDEIPSANDDFCIKDNISKCGQDQLMFSATDSKSLLSEDLSQNTIPHKRRKNYVCSFCGKNYLKLKALRTHITKNHVSTDLAHECNQCKNAFNSEHDLKLHSALHTKGTSWKCNKCDKEYNSKQVLRRHIQRHMEAKRFACEACGKRFMERYALLRHARVHTGEAPLKNHHCQLCDKRFSCARQLAAHAHAHGGARPCACACGKAFPSPRLLASHARVHSAHKPHACHYCDKRFRHASTRNTHVRTHTGERPYVCAACGKSFIQNSNLTLHMRTHTGERPYSCGECGRKFSSGSTLKAHARSHTGERPYSCTVCGKRFARMNMKAHMRTHTGERPFECSACPKKFVNASRLREHARVHTGEKPFQCAMCPQNFPTKSHLMKHVKTHETHKKSTKRIMVRNPEILVSNKIVISEKTATIEGLKTETVTAEETACRIVILDAEQVPLEVHLAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429242;
- 90% Identity
- -
- 80% Identity
- -