Tjap017549.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- Zfy1
- Assembly
- GCA_033459515.1
- Location
- CM065951.1:468329-477014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.3 5.3e+02 1.7 0.9 1 23 188 213 188 213 0.85 2 15 4 2.6e+02 2.7 0.0 6 23 295 313 295 313 0.95 3 15 0.0022 0.14 13.0 0.3 1 23 321 344 321 344 0.94 4 15 1e-06 6.6e-05 23.4 1.0 2 23 367 388 367 388 0.97 5 15 3.5e-07 2.2e-05 24.9 1.4 1 23 394 417 394 417 0.97 6 15 0.0017 0.11 13.3 0.4 1 23 423 445 423 445 0.96 7 15 1.6e-05 0.001 19.7 0.3 1 23 451 473 451 473 0.98 8 15 0.015 0.98 10.3 0.5 1 13 479 491 479 493 0.90 9 15 0.0095 0.61 10.9 2.7 1 23 623 645 623 645 0.98 10 15 5.3e-05 0.0034 18.0 1.3 2 23 652 674 651 674 0.94 11 15 0.00012 0.0078 16.9 5.3 1 23 680 702 680 702 0.97 12 15 2.5e-06 0.00016 22.2 3.1 1 23 708 730 708 730 0.98 13 15 0.00052 0.033 14.9 0.7 1 23 736 758 736 758 0.97 14 15 2.6e-05 0.0017 19.0 3.9 1 23 764 786 764 786 0.92 15 15 0.001 0.065 14.0 0.8 1 23 792 815 792 815 0.95
Sequence Information
- Coding Sequence
- atGAACAACGGAGTTGGACCAATAGTTGTCACCATCACAAACAACAATCAGTCGATATCAACTACTCCGAATATCATGGATATTCCAGCACCGCCGCCAGTAAATCTTGAAAATATTGAAGATTTCTCCAATGTGTGTCGGATCTGTGCCACCGTCACAGAATTCGTCATACCCATATTCGAGGGAGAGGGTTTGCAGAACAATCttgcaaacaaaataagaaagCATTTGCCTATAAGGGTGACGCCGCAGGATGTGCTGCCGCGCGTGGTGTGCTACCAATGCGCCAGCACGATGCTGGCGTGGCACGAGCTGGTGGCGTGCTGCCGCCAGGCTGACACAGCGCTACGCTCACGCCTGGCCAGGATGCCCGCACTTGCTCAAGAGGATCGAAAACCAATAATATCTACGACTGGCGAGACTGTAAGCGACATAAACAGCTTATTCAACATTTTACCTAACAGGTGTAGCACTCCCATAGAGTTCTACAGTATGGTACGAAACATACTGACCGATTACTATCACACGTTGAACGTTGATGAGAACGATTCAGATATGAACCATGTTTGCCAGAATTGTAGTGAAAAGACTTCATTGACGAGCCTCGCCGCCCTGGCTGACCACCTACATACAGAGCATTCAAATGAAGTATCTTCTCGGGAGAAATTAGCAACATTTATCAATAAGTACATAACGTTTGAGGAAACTTTAATATCCGAAGCATCAGACCGCGAGGTACAGTCAGATCACGAGGAAAAGCCAGATAAAAAGCTTCCGAATTACTGCTGCCCGTTCTGCGAAAATATTTACTCGTCGACCACTCGCCTGTTGTGTCATATCAATAAACATGTGGAAGTGATGATAGAGGATGGAGTCATCTGCTGTGAAGTAATTTACAAGGACAAGAACGCCTTCGTCGAACATTTGCAGACGAGCCACGTGGATCGCGTCATATCCAGCCACGTTTGCAAAACTTGCGGCTACAGCACTGATGACGTCAATGATTTACAAACACACATTAACGACGCACACTTGCCGAAGGAAGTTGTAAAGGAAAAGAAGCCACAGAGCACAAAGATCCAGAAATACATTCCCGCAGTGTGTCCGGAGTGCAACAAGACGTTCTCCAATAAATACAACATGTTCGTGCATCTGAAGAGCCACAAACAGAGTGAAGAGTACCAGTGCGATAAATGTGACAAAACTTACACAAATCGGGGCAATCTTACGAGCCACCGACGACTCGCCCACGAAGGCATCCTCAACTACGTGTGTTCGGAATGTGGCGAAGCTTTCCCCACTCGATCTTGTCGCGACGTCCACGCCAGGTTACACACCGGAGTGAAACCTTACAAATGCGACTACTGTGGGAAGGCTTACAGAGCCAAAAACACGCTGGACCGCCACATCGAAATTCATTTCGATATAAGAAAATACGAATGTAACATCTGCAACAAGAAATTCAGAAAATGGAATGGGTGCCAGACCAGCGCGATAAAAACGGAAATTGACAACAAAAACGCATCAGATGATAGTGATGAGGGACATTCCGTCGACGACGATGACGAACCACTGTCCACTCTCGTTCATAGGAAAGCTGATCTGTACAACAATTTTTACAAAGCTTTAGTGAATTTCAAAAATCATTTCGCTAGTAAACATAAAAACTTTGAAACGTATCCAGAATTCACAGAATCCAGCGACTCGGAGGCTTTAGAAGATAACGAAGAGGATACCGACATGAATGATGACAGTATTGAAAACTACGACGACTTGACACAATCTAACATGAGGAAAGATCGCATGGACGAAGAAACTAGGTTAGAACTCATCCAAGTGCAAAGGAAAGTGAACGGCAAAGTGTTGTACACGTGCAAGATATGCGACAAGAACCTGAGCTCGCCGCACACGTACTTGTTCCACCAGCGCATCCACACGGGCGAGCGGCCCTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCGCCGGCCTGCAGCGCCACGTGCGCGAGACCCACGAGCGACTGCGGCGCCACTCCTGCACGCTGTGCCACAACAAGTTCGCCAACTCGCAAAACCTCAAGCAGCACATGCGCATCCACACGGGCGAGCGGCCCTACGCGTGCGCGCACTGCGGCAAGCGCTTCACGCAGAGCGGCTCGCTGCACGTGCACCTCAAGACGCACAGCCTGCACTTCCCGCACCGCTGCGCGGACTGCGGCGCCAAGTTCCGCCTCCGCGCCGGCCTCGCGCGCCACCGCCTCAAGCACACGGGCGAGCGCCCCCACGCCTGCACGCACTGCGGCAAGGCCTTCCGCCAGCGCCACGACCTCAACAACCACCTGGTGGCGCACTCCGACGCCAAGCCGCACGCCTGCGCCCTCTGCGGAGCCGCCTTCAAGCAGCGCCGCGCGCTCCGCTACCACACCAAGCGGGTGCACGACTCCGACCTCGCGCACATACACCAACTCATCTACAGCCAAGCCTCGCACTACTAG
- Protein Sequence
- MNNGVGPIVVTITNNNQSISTTPNIMDIPAPPPVNLENIEDFSNVCRICATVTEFVIPIFEGEGLQNNLANKIRKHLPIRVTPQDVLPRVVCYQCASTMLAWHELVACCRQADTALRSRLARMPALAQEDRKPIISTTGETVSDINSLFNILPNRCSTPIEFYSMVRNILTDYYHTLNVDENDSDMNHVCQNCSEKTSLTSLAALADHLHTEHSNEVSSREKLATFINKYITFEETLISEASDREVQSDHEEKPDKKLPNYCCPFCENIYSSTTRLLCHINKHVEVMIEDGVICCEVIYKDKNAFVEHLQTSHVDRVISSHVCKTCGYSTDDVNDLQTHINDAHLPKEVVKEKKPQSTKIQKYIPAVCPECNKTFSNKYNMFVHLKSHKQSEEYQCDKCDKTYTNRGNLTSHRRLAHEGILNYVCSECGEAFPTRSCRDVHARLHTGVKPYKCDYCGKAYRAKNTLDRHIEIHFDIRKYECNICNKKFRKWNGCQTSAIKTEIDNKNASDDSDEGHSVDDDDEPLSTLVHRKADLYNNFYKALVNFKNHFASKHKNFETYPEFTESSDSEALEDNEEDTDMNDDSIENYDDLTQSNMRKDRMDEETRLELIQVQRKVNGKVLYTCKICDKNLSSPHTYLFHQRIHTGERPCVCHVCGKQFRAPAGLQRHVRETHERLRRHSCTLCHNKFANSQNLKQHMRIHTGERPYACAHCGKRFTQSGSLHVHLKTHSLHFPHRCADCGAKFRLRAGLARHRLKHTGERPHACTHCGKAFRQRHDLNNHLVAHSDAKPHACALCGAAFKQRRALRYHTKRVHDSDLAHIHQLIYSQASHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429243;
- 90% Identity
- -
- 80% Identity
- -