Tjap016219.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065948.1:16926955-16936151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.64 41 5.2 1.7 1 23 69 92 69 92 0.95 2 24 0.0049 0.31 11.9 0.1 2 23 118 140 117 140 0.88 3 24 0.0077 0.49 11.2 0.4 1 23 162 184 162 184 0.95 4 24 0.0023 0.15 12.9 1.4 3 23 190 211 188 211 0.93 5 24 0.069 4.4 8.2 0.1 3 21 215 233 213 234 0.91 6 24 0.9 58 4.7 1.3 1 23 241 264 241 264 0.89 7 24 0.036 2.3 9.1 4.3 1 23 271 293 271 294 0.88 8 24 1.8e-06 0.00011 22.7 2.3 1 23 298 320 298 320 0.99 9 24 0.025 1.6 9.6 0.6 2 14 327 339 326 340 0.89 10 24 0.013 0.81 10.6 0.1 6 23 373 391 373 391 0.98 11 24 6.6 4.3e+02 2.0 1.6 2 23 414 436 413 436 0.94 12 24 0.026 1.7 9.6 0.7 2 23 459 480 458 480 0.95 13 24 0.0044 0.28 12.0 1.8 2 23 485 507 484 507 0.91 14 24 7.2 4.7e+02 1.9 0.1 1 10 539 548 539 553 0.86 15 24 0.00069 0.045 14.5 0.1 2 23 583 605 582 605 0.93 16 24 0.17 11 7.0 0.2 2 23 630 652 629 652 0.94 17 24 0.059 3.8 8.5 0.3 2 23 675 696 674 696 0.96 18 24 6.5e-05 0.0042 17.8 3.0 2 21 701 720 700 721 0.94 19 24 0.023 1.5 9.7 0.6 2 20 731 749 731 751 0.94 20 24 0.027 1.7 9.5 0.3 1 23 758 781 758 781 0.94 21 24 0.00028 0.018 15.8 0.4 1 23 788 810 788 811 0.95 22 24 0.00028 0.018 15.8 1.6 3 23 818 838 816 838 0.95 23 24 2e-05 0.0013 19.3 0.3 1 20 844 863 844 866 0.94 24 24 0.00062 0.04 14.7 5.2 1 23 872 895 872 895 0.97
Sequence Information
- Coding Sequence
- ATGGTACAAAAATATCAAGTAGGAACTGAAATATTCTCTTTTTTAGACAATGACGCTCCGAAAACGCTGAATTCCACCGAGCTGAAAGAAGCTAGCAAAGAAGCCAAGCTGGCAAGACACTCCAAACGAGAGGTGGCTTTGCATAATGCCATCACTTTTCTAAGGCATACTACCATTTATCCTCTCCAGTATATCAATGGACATTTTCGCTGTTTTTTCTGTGATGACAATTTCGATGAGCCAGCCTTATATAGGCATCATATAGACTCAAAGCACGAAGGTGTAGATAAAGCTACCATTATCAACTTAAAGCACATTAATAGCCAATTACGTGTAGATGTAACTGATCTTCGTTGCAAGGGTTGTCCTAAAACATTTGCTACTCTGGAGGCAGTCGGTCGCCACTTGGTAGAAGAACATCAATTGACTGTTGATCTCAATGAGAGTTTAGGAATTGTACCTATGAAGCTACAGAAAGGCTATTACATGTGTCTTATTTGTGAAAAGAAATTTACTGGCTACAAAGCGTTATCTGTTCACTCAGGTACACATTTTTGCCGAATTATTTGTGATGTGTGTGGCAAGAAATTTGAAAACGCGACCAGCGTTAGAACTCATACGTACAGGTGCCACGGAGTAGCGTGCACCATGTGCAAGAAATCTTTTCCCTCCGTTGAAGCAAGAAAAGAGCACGTAAGAAGTAAAGAATCGTGCTTCCCCTTCAGATGTACTGTTTGCAAACAAAGAttcctcttctgggaaaagagaCAGGAACATTTAGAAAAGGTTCATGGGAAGCCGAAGATAGAATTTCCTTGCAAAGAATGTgacaagatatttaaaaaaagaacacaactatattttcattttaaagccCATCATACTGATGATTACAAATGCAAGGAATGCAATAAGAGGTTTCCTACCACTCGGGATCTACGAGAACATATGACTACTCACACTGGTCAACGTCCTTTAGAATGTACTGTGTGTCATAAAACATTCTCCAGAAAACAAAGTCCGATGTCCGTGGCGAGAATGAACACTCGGCTACTAATTAGGTATTCGACAGCACATCCGTTCAAGCTTCCAGAAAGCACCATGGTTTGCATTTGCTGCGATGAAAGTTTCACTGTACCTGCCGATTTCAGGACGCATATGGACACTAGACACAGTGATGTGAAATGCGTCCTCGGTCTCATGCCAAACGGATTTGTCAAAGTAGATTGTACTGAGCTCCGCTGTAGAAAATGTACAACCATGATTCATGACTTGAAAGAGATGGCAACGCATTTGCAAAAAGCACATGAGGTTTTAATTAACTTAGATCATCCCCTTGGGTTGATACCTTTTAAACTACAAAAAGACCAACTTTCATGCGCCTTGTGTGGCGTTAAATTCTTCAGCATGCGAACTCTAAGTCGACACACTTTGTCACATTTTCACAACTCCACTTGTGAGATGTGCGGAAAATCTTTCGCCAACGAAAGGTCGCTACAATGTCACGTGCAGCAGACACATAGCAGCAAAAAAACTTGCATTAAATGCAAGGCACAGTTTGACTCCACACAAGCGAAGTGGAACCATTTGAAAGAGTCTCCTAAATGCTGGTACCACATGTGTGGAATATGCAACGAGCGTTTCTTGACTTGGAAACAAAATCTGATGCAGGTCGCGAGACAGAACGCCCGGGCGATAATCCAAAATACCACAGCGTATCCATTTAGACTGCCCGAGGGTAAGATGGTCTGCGTGTACTGTGCCCAGAGCTTTACAAACCCAGACGAATTCAGAGAGCACATGGAGGAATACCATATTAAAGTGCAGTTGAGAATTGCTTTCGCTCACATATCTGAGGGTTTCATCAAGGTGGACTGTACTGATCTTCGTTGTAGAATTTGCAATGAAACATTCGACATGTTACAAAAAGCCGCTGAGCACATTAAAAAAGTTCATAATGTGGAAATTAGCTTAAATGACGAACTTGGCTTGCAGCCTTTTATTGTGAAATCTGATATGCTCATGTGTGCGGTTTGCAAACTAAAAGCATCGAATATACGAACATTAAGTAGACACATACAGACTCATTATTTACTGTGCACCTGCGAGATGTGTGGCAAGTCATACTCGTCGAGCACTTCCTTACAACATCACATCAAATTTTCTTGCAAAAAGGGTGTCAAGCAAAGGCGTTgcagaaaatgtaattttgtcttTGACACGCCAGAAAACAAAAAGAAGCATCTGGAAGAATCAAAAAAATGTTGCCAGCATATATGCAACGTTTGCGGCCTGAGATTCGGCTATTGGACGGCAAAGCAGGAGCATTTAGAAAAAGTTCATGAAGTTCCTAAAAAGAAATATCCTTGTCTTGAATGCGGGTTGGAGTTTCCAAAGCCTTATCTTTTAAGAAATCATTTTCAGATTCATCATACAGACGACCACTGGATTTGTTGTTTTTGCGATCGGAAGTTCGAAAGAGAGTACGCGTTAAACAGGCATATGGTTTCACACACTGGCGTAAAAGCGTTTATTTGCGACGTGTGTTCCAAAGCGTTTCCCAGGAAGTCGACGCTAACGCAGCACATGTGGATTCATAGCGAAGTAAAGAGGCACGAATGCAAGATTTGCGATAAGCATTTCAATCAGACAGTCACTTGGAAGAGTCATATGAAGTCGCGACATCCCGAACTCTGTGACTTTTAG
- Protein Sequence
- MVQKYQVGTEIFSFLDNDAPKTLNSTELKEASKEAKLARHSKREVALHNAITFLRHTTIYPLQYINGHFRCFFCDDNFDEPALYRHHIDSKHEGVDKATIINLKHINSQLRVDVTDLRCKGCPKTFATLEAVGRHLVEEHQLTVDLNESLGIVPMKLQKGYYMCLICEKKFTGYKALSVHSGTHFCRIICDVCGKKFENATSVRTHTYRCHGVACTMCKKSFPSVEARKEHVRSKESCFPFRCTVCKQRFLFWEKRQEHLEKVHGKPKIEFPCKECDKIFKKRTQLYFHFKAHHTDDYKCKECNKRFPTTRDLREHMTTHTGQRPLECTVCHKTFSRKQSPMSVARMNTRLLIRYSTAHPFKLPESTMVCICCDESFTVPADFRTHMDTRHSDVKCVLGLMPNGFVKVDCTELRCRKCTTMIHDLKEMATHLQKAHEVLINLDHPLGLIPFKLQKDQLSCALCGVKFFSMRTLSRHTLSHFHNSTCEMCGKSFANERSLQCHVQQTHSSKKTCIKCKAQFDSTQAKWNHLKESPKCWYHMCGICNERFLTWKQNLMQVARQNARAIIQNTTAYPFRLPEGKMVCVYCAQSFTNPDEFREHMEEYHIKVQLRIAFAHISEGFIKVDCTDLRCRICNETFDMLQKAAEHIKKVHNVEISLNDELGLQPFIVKSDMLMCAVCKLKASNIRTLSRHIQTHYLLCTCEMCGKSYSSSTSLQHHIKFSCKKGVKQRRCRKCNFVFDTPENKKKHLEESKKCCQHICNVCGLRFGYWTAKQEHLEKVHEVPKKKYPCLECGLEFPKPYLLRNHFQIHHTDDHWICCFCDRKFEREYALNRHMVSHTGVKAFICDVCSKAFPRKSTLTQHMWIHSEVKRHECKICDKHFNQTVTWKSHMKSRHPELCDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -