Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00055 0.93 9.9 2.0 13 38 41 68 34 69 0.76

2 7 0.0076 13 6.2 3.0 9 44 67 99 62 99 0.80

3 7 2.3 4e+03 -1.8 2.4 8 25 95 110 89 114 0.61

4 7 1.2e-05 0.02 15.2 0.2 19 44 131 153 129 153 0.95

5 7 0.0028 4.7 7.6 1.9 16 44 157 182 154 182 0.82

6 7 0.0024 4.1 7.8 0.4 14 43 183 209 178 210 0.78

7 7 0.00034 0.58 10.5 3.5 10 43 209 237 206 238 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00055	0.93	9.9	2.0	13	38	41	68	34	69	0.76
2	7	0.0076	13	6.2	3.0	9	44	67	99	62	99	0.80
3	7	2.3	4e+03	-1.8	2.4	8	25	95	110	89	114	0.61
4	7	1.2e-05	0.02	15.2	0.2	19	44	131	153	129	153	0.95
5	7	0.0028	4.7	7.6	1.9	16	44	157	182	154	182	0.82
6	7	0.0024	4.1	7.8	0.4	14	43	183	209	178	210	0.78
7	7	0.00034	0.58	10.5	3.5	10	43	209	237	206	238	0.85

Coding Sequence: ATGAACGAATTTAAAATAGCAGATATCGAAGTGGACGTTGTGCGGCTGGACTCGGACATTGTCGACGAGCACCTGAGAAACTCCACCGCGGTCCTCCACGATATATTATCCGGAGACGCAGACGAGAACGGGCACGTGTGCAGTATATGCGGGAAGATTTATAAAACAGCTAACACATTGCGCGCCCACTGCCTGTTCAAGCACCCGGACGACGACAAAGTACGGTATTGCAAGACGTGCGACAAGACCTATCCGTCGCAGCTGAGCTTGAAGAAGCACGTCAAGTACATGCACCAGTACAGCCACCGCTGCAAGGCTTGTTACAGAACCTTTGAGACTGTGGAGCTGTTGCGCGCCCACGGCGACGTATGCAGCAATGTAGACTCACCGTGCAATATTTgtggcaaaatatttagttcgGATCTGGCCCTGCGTAATCACCTCAAATACAAGCATCCGAATAGTGAGAATTACAAGTGTGATCATTGCAAGCGTACGTTTACCACCGGTCGCAAACTGAGCAACCACGTCGCCACCTCCCATCCCCAAGGCGAGATGACTTGTCTTTGGTGCGAGAAGGTGTTCAACTCAGCAACTGCTTTACAAAGCCACATTCTGTACAAACACACGGATGACAAAGCTAAATGTTCGCATTGTTCCAAAGTATTTGCAAAGAAAACATTTCTAGACAAGCATATGTCCAGGATTCATGTTGGcgtgtaa
Protein Sequence: MNEFKIADIEVDVVRLDSDIVDEHLRNSTAVLHDILSGDADENGHVCSICGKIYKTANTLRAHCLFKHPDDDKVRYCKTCDKTYPSQLSLKKHVKYMHQYSHRCKACYRTFETVELLRAHGDVCSNVDSPCNICGKIFSSDLALRNHLKYKHPNSENYKCDHCKRTFTTGRKLSNHVATSHPQGEMTCLWCEKVFNSATALQSHILYKHTDDKAKCSHCSKVFAKKTFLDKHMSRIHVGV

Sequence clustering based on sequence similarity using MMseqs2