Tjap002385.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065929.1:6194401-6198896[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 8e-05 22.6 0.0 1 43 19 61 19 62 0.93 2 2 4.3 3.1e+03 -1.7 0.0 14 22 143 150 138 151 0.77
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGCCAGGCGTGGTGCCGCGCCACATCAACTGGACAGAAGATAGCTTAACACTTGCGTtcgaagaattaaataaaaaacaaaaaagtatcaaCGAAATATCCCGGATTTATGGCATATCCTCTCGAACCTTACGAAGACGGTACGAAAAAAGAAACCAGCTGCTGGTAACCCAAGGAAAATACCCTGCCCTTggctttgaaaatgaaaaaagacTAGTTTCCCATATATTGAAGCTCGGAGACGCAGGATTTCCTCCTGAAAGAAGTTTAATTCGCCAATTAGCCTATCAGTTTGCCGAAAAATTAGGATTGAAgcacaattttaataatgaaactaaaatggCTGGACCGCAATGGTTGAAAAGCTTCCTTGAAAGAAATCCCGAAATAGTTGTGAGGCAAGCTGAGGGCTTATCAATTCAAAGAGCGAAGGGTCTAAGCAGAGCCGAAGTAGCTAAATTTTTTGATCTGCTCATAACCGTCTTAACTGATAATGATTTGCTAGATAAGCCGGAGCGAATTTTCAATATGGATGAAACCGGTGTCCAACTCAACAATAAACCTGGCAAGGTATTGGCCAAGAAAGGTGCTAGAACAGTGAAATCACTTACTTCCGGTGAAAAAGGTGAAACAATTACCGTTGTTGCTTGTTGTAACGCTATTGGCAATTTTCTTCCACCTGTTCTGATTATCAAGGGGGTAAATAAAAAGCCAGAATTTGAAGAAGGACTTCCTCTTGGTTCAAAAGTTTATATGCAAAAGAAATCAGCATATATTTCCTCAGAACTTTTTTACAAGTGGCTGACCGAACATTTTATACCCCGCAAGCCTCCAGGAAAGGTATTACTAATTTTAGATGGTCATTCATCTCATTCCAGTGCTGTCAATATGCTAGAAACTTCTCGTGACAATGATATGATACTGCTTTGTTTACCTAGTCATACTACTTCTGCTTTACAACCATTAGACGTATCTGTATTCGgaccatttaaaaaatactattatgcggagacaaacaattttattcgcACCAATCCACAAAAAAAACTGAACCGGTACAATTCTGGTCAACTGATAGCAAGGGCGTGGATTCGAGCAACGACACCTGCCAATGCAATAAGTGGTTTTCGCGGCAGCGGAATATATCCAGTCAATCCAAATGCTCTGTCTGATGCTGAATTTGCTATATCAGATATTGCATTGGGGGAGCTTACGCAGGAAAAAGAGTCTGAAACTATAAAAGATCAATTACCAGGCGCTTCTGAAGAACTTGCGTTACGTGAACGGATACAGGAAACTGAATATGACCGAGGTAATGTACTAATTCGACAGAACAAAGTGACTTTTCAAGGCGATCAAGTCCCAAGCTACTGTGATAAAAATAACCCAGAAACTATCATAAATGAAGCTGAGCAGAACAGTGTGAACCAGACTTGCACGCCACCAAGGCCGTCGTCGAGTCTTTTGGCTCTTTCTCATGATTGTTTAGCCCTAGGAGATGGTTACCGAACTGAAATCCAGATCTAA
- Protein Sequence
- MPRKYKRKPGVVPRHINWTEDSLTLAFEELNKKQKSINEISRIYGISSRTLRRRYEKRNQLLVTQGKYPALGFENEKRLVSHILKLGDAGFPPERSLIRQLAYQFAEKLGLKHNFNNETKMAGPQWLKSFLERNPEIVVRQAEGLSIQRAKGLSRAEVAKFFDLLITVLTDNDLLDKPERIFNMDETGVQLNNKPGKVLAKKGARTVKSLTSGEKGETITVVACCNAIGNFLPPVLIIKGVNKKPEFEEGLPLGSKVYMQKKSAYISSELFYKWLTEHFIPRKPPGKVLLILDGHSSHSSAVNMLETSRDNDMILLCLPSHTTSALQPLDVSVFGPFKKYYYAETNNFIRTNPQKKLNRYNSGQLIARAWIRATTPANAISGFRGSGIYPVNPNALSDAEFAISDIALGELTQEKESETIKDQLPGASEELALRERIQETEYDRGNVLIRQNKVTFQGDQVPSYCDKNNPETIINEAEQNSVNQTCTPPRPSSSLLALSHDCLALGDGYRTEIQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01016602;
- 90% Identity
- iTF_00822932;
- 80% Identity
- -