Tobe004606.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- ZEB2
- Assembly
- GCA_947578465.1
- Location
- OX387918.1:16024658-16038072[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.1 10.3 0.9 1 23 237 260 237 260 0.97 2 12 0.00077 0.047 14.6 2.4 1 23 267 289 267 289 0.96 3 12 5.6 3.4e+02 2.4 0.2 1 19 293 311 293 316 0.86 4 12 0.011 0.65 11.0 0.5 1 23 321 344 321 344 0.95 5 12 0.0045 0.28 12.2 1.3 2 23 349 371 349 371 0.97 6 12 0.13 8 7.6 1.2 2 23 378 396 377 396 0.76 7 12 0.9 56 4.9 1.8 3 21 405 423 404 428 0.91 8 12 0.00065 0.04 14.8 0.5 1 23 436 459 436 459 0.91 9 12 0.0033 0.2 12.6 5.0 1 23 465 488 465 488 0.97 10 12 1.5 90 4.2 1.3 3 11 499 507 498 510 0.88 11 12 6.1 3.7e+02 2.3 0.1 12 23 534 545 533 545 0.88 12 12 1.2e-05 0.00071 20.3 0.4 1 23 551 574 551 574 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGAATGTGAAGTCTGTTTGCTGGGAATGCTCATCTTTATTCCACAAAGCATATAAATTCAAACTGCGAGTTATACAAGCCCAAGAATGCTTGAGGAGTACTCACAAAAAGGTTACAAGCCCAGCACCGCTAAGTGATCTAACATGCTCAATTATAAATTTCAATGATATTTGTTGTGATCAAAACATCGAAAGTCTAAATCAAGATGATAGATTGCAGAAAAGTCTTGTAGTGATTAAAAATGATGTAAAGAAAATCAAATCAGAAATGTTTCCAGAGGAGGATAACAATGATAATGAATATACTTGTTTAAAAGGCGACTTTATCACTATAAATATATCAGGCATAAAAACTGATGAAAATGACACTGAAATTAATGAAACACAAATTGATAACACAAGTTGTATTAAAAACGAAAGTGATTCTGATGAGATATTTAGTAATGAAACCATTGTTAAAAATTTACCAATTAACTCTGATAAGACACTAGCTAAGCTTGAGAAAACAAAAACTAACTCGAAGAGAAATCGGAAAATTAAAATTGAGAAAGATGTTAAAAAAGTGAGGGCAGAAAAGAAAAAAAAGAAGAGAAAGTTAATAGTTACAAAAGATAATTATATTATAATCAATATGACGGAGGAAGAAATGCTAGCTGCAAGAGAGTCCGCACGACAGACTGATAGATATAAGAACAGAGTGAAGTTTAGATGCACATGGTGTATAGCTGGATTTTTTGATAAGGATTTATATGAAAAACATATGAAAAGCAGACATTCAGAGAAGGCAGGTGCCCATCAATGTCAAATCTGCGAGACCAGATTCGCAAGTGCTCATTACTACAGAGAGCACATGGAGGGTCACTATAAGAAGTACAAATGCAAAGCGTGTGGGTTTGTCGGCTACAAGTTGTCAGAAATGGTGTCTCACGACGCCAAAGAACATGCTGTTAGAAGGTTTGCTTGCAAAGTCTGCCGTGAAGATTTCCCGTCTCCGTCAAGCTTGCGATTCCACCGAGAGACGACTCACCAGGCGCCCGCCAAATGCGAATCTTGCGCTAAGACATTCACTACTATGAATGGTCTCAGAGTCCACACTCAAAAAATGCACAGCCACGAGCCAAAGTCTCAGTGTACAGTTTGCGGCACGCGCGTTCGCTACCTACAGAGCCACATGCGCAAGCACAGAGCGGCACCAGAGGCCGCGTACTGTGCCGAGTGCGATCAGAGATTCAAATGCGCAGAATATTACAGATCACATCTCAAGTATTCTGCGCGACATCGCGAGGACACTGTACTCAGCCACGCATGCAAAGAATGCGATGCTAAGTTCGTGAATGCAACTGGACTGAAGAAGCACACGATAGCAAGACATTCCACTGTGCGGCCCTTCAAGTGTGATCGCTGTGGAAAGGGTTTTGAAGCGCAGTGCAAGCTGAAACTCCACATACGTCACTTCCACGAAGGAGTGGAGAAACCAAAAGATAAGATATGCCACATCTGCGGACGAGGGTTCAATGTATGTTACATACTATACAACCTTATTTACAATGGCTGTAAAATAAGATATGCTAGGATCCCACTCGGGTATAGGCCTACAAAATTCATGCTGGCCAATCATATCCGCGTCCATACAGGCGAGAAGCCATTCCGGTGCGACATCTGTTCCGCCGCCTTCAACCAGAAGAGCTCTCTCACTACGCACACGCGCGGCGTTCATCTCAAGCTGAAGCCAAGACCCAGCCGGGGGCGCAGTGCTTAG
- Protein Sequence
- MMENVKSVCWECSSLFHKAYKFKLRVIQAQECLRSTHKKVTSPAPLSDLTCSIINFNDICCDQNIESLNQDDRLQKSLVVIKNDVKKIKSEMFPEEDNNDNEYTCLKGDFITINISGIKTDENDTEINETQIDNTSCIKNESDSDEIFSNETIVKNLPINSDKTLAKLEKTKTNSKRNRKIKIEKDVKKVRAEKKKKKRKLIVTKDNYIIINMTEEEMLAARESARQTDRYKNRVKFRCTWCIAGFFDKDLYEKHMKSRHSEKAGAHQCQICETRFASAHYYREHMEGHYKKYKCKACGFVGYKLSEMVSHDAKEHAVRRFACKVCREDFPSPSSLRFHRETTHQAPAKCESCAKTFTTMNGLRVHTQKMHSHEPKSQCTVCGTRVRYLQSHMRKHRAAPEAAYCAECDQRFKCAEYYRSHLKYSARHREDTVLSHACKECDAKFVNATGLKKHTIARHSTVRPFKCDRCGKGFEAQCKLKLHIRHFHEGVEKPKDKICHICGRGFNVCYILYNLIYNGCKIRYARIPLGYRPTKFMLANHIRVHTGEKPFRCDICSAAFNQKSSLTTHTRGVHLKLKPRPSRGRSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -