Tobe004692.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387918.1:17107574-17126301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.073 4.5 8.3 1.4 1 23 388 410 388 410 0.95 2 13 0.0023 0.14 13.1 0.9 1 23 416 439 416 439 0.95 3 13 1.2 74 4.5 3.3 1 23 443 465 443 465 0.97 4 13 0.00052 0.032 15.1 3.7 1 23 470 493 470 493 0.97 5 13 0.0098 0.6 11.1 0.2 3 23 499 520 497 520 0.93 6 13 0.1 6.3 7.9 0.8 3 23 536 557 535 557 0.95 7 13 0.073 4.5 8.3 0.6 1 23 569 593 569 593 0.92 8 13 0.084 5.1 8.2 0.6 1 13 652 664 652 666 0.85 9 13 0.084 5.1 8.2 0.6 1 13 682 694 682 696 0.85 10 13 0.084 5.1 8.2 0.6 1 13 712 724 712 726 0.85 11 13 0.0012 0.076 13.9 2.2 1 23 742 764 742 764 0.94 12 13 0.016 0.98 10.4 2.4 1 23 770 792 770 796 0.97 13 13 6e-06 0.00037 21.2 0.4 1 23 802 825 802 825 0.98
Sequence Information
- Coding Sequence
- ATGTCAGGAGAATTGCTGCTCTATGTTGCAAACAATGTTGAACTATGTGAGAATCTAGAAACAGCCAGCACAATCATCAAAACTGACTCTCCAGCACCTGATTGCAAAGTGCCTCCAGCTACAAGTGATACTGAAGTTCCGATTGCACCTGCGTCAGTGTGCAGAATATGTCTACGCGCAGACATCGCGATGTGTGCAGACATGGACGACACTCTAGAGGTGTTCTACGATGAACTCATCTATTTTGATAGTTATGAGCATGAAGCGCTGTCCTACTGCCAGTTATGTGAGTATCAGCTGCGCCGGCTCTACAACTTCAGACAGAAGTGCAGGCGAGCTCATATCCTACTCAAGGCCAAGGGAGCTGATCTTTTTGGACCGGAAGAGATAAAAAAAATACAGAACATAATTCCACGATCCTCCATTGGCATTTGCACTGCCAAATCGAAACAAATGGTATATTTTACAACATCGAAGGCAAACAATCTCGAAAATTCAATAGAAGATGCTCCAGATATTGAACCAAATGATGATAAAGATGCGACCAGCTTTTCTTCTGTCGATAACTTCTCTTTACTGATCAAAAAGATCGGCTGCGATGATATCCTGAAGCTCGAAAAAGGAGGACTCTACTCTATGGAAAACAATTACCCACAAAATGATTTAAAAAGTTACATCCAAGACTTCCTGAAAAATGAAGATAGTGTCTTCGATGTTGGTGACGATATACAGAACGATCACGAAAATAATACAACCATCAAACGTAAAAGAAAAAGAAAAAAAGTACCTAAACTTATTTTAACAAAATCGGAAAAGGTAATTCGCCGTAAAAGAAAATCGATGGAAAACTTTAAGGAGTGGGTTTTGCTCGTGATAAAACGTGGGGAACTAGATGGTATAGAAGATCTAGGGCAGAAGATTAACGAGGAAGTGGTTGGTAAGCTTTTCGACAAGTGTCCAATGGGGACTTTTATACAAACCGGACTGCACCACTTCTCAGACAGTAAAATTCCAAAGATGCGTCGATTCCTGCAGAGTTTGTTGCAGAGATACAACCCGTTGTACGAAGATATGTTTGATGTGACGTACTTACACACGAAAGAGAAGCAAATGGAAGAATTCAATGCGAGACAAAACTCGCCCGAGTATAAGTACGCGGTGTTTAAATGCCATATATGTTATCAGGTGTTCGAACTCCAGGGGCTGCTGGATTTTCACATGAAATGGCATGATGAAAGTAAACCCCATGTTTGTCCCATATGCTCGATGCGGTTCGAGAAAGAAAAGCCGCTCAAAAAACATATCACCGTACGTCATAGAGAGAAGTACAGCTGTAAACTGTGCCCCTTCGTGACATACGGACATAAAACTATGCGAAGTCATTACCGGGACCATAAACGAGTGTTGTACACGTGCCCCGAGTGTGATAAAAAGTTCTGCAAAATAACAACCATGCAGAACCATGTCCGGTACACCCACCGTTTGAATAGCATCTGTTCGTTCTGCGGCCGCCGGCTACCCTCCGACGTGCAACTGAAGCGGCATATGGCAGAACGACATAGCGATGTGACCGCGGAGACATTAGCGTCGACGCCGACCGAATGTTGCAACAACTGCAAAGCGGCGTTCTACTCGCGGGAAGCATTGCTCTACCACGCCGCAACCTCGCATCGCCCCACCTACAATGAGGAAAAGAAAGTATCGTACTCATGTTTCTATTGTAAGGTAGACTTCGAGACTGTAGAGGCGTTGTACACGCACAAGCGAAGCGAGGAGCATCGCGACACAATGCAACACGTAGGGGAAGGGGCCAAGAAAGGCATACGGAGATCTCATAGAACGTGCCCACTTTGCAACGTGGAAGTAGTGAACGAGCACCCTCGCTCGCTGTACGAGCATTACCGCGCGGCGCATCCGGCGGCGCCGTACCATCCTGAACCCGGCGGACAGGCCTTCCTCTGCGAACAGTGCGGGAAGACATTCACGCATTACCGCGCGGCGCATCCGGCGGCGCCGTACCATCCCGAGCCCGGCGGACAGGCCTTCCTCTGCGAACAGTGCGGGAAGACATTCACGCATTACCGCGCGGCGCATCCGGCGGCGCCGTACCATCCCGAGCCCGGCGGACAGGCCTTCCTCTGCGAACAGTGCGGGAAGACATTCACGCATTACCGCGCGGCGCATCCGGCGGCGCCCTACCATCCCGAGCCCGGCGGACAGGCCTTCCTCTGCGAACAGTGCGGGAAGACATTCACGCTAAAGCACCTGTACCTAGACCATCTGAACTTGCATTCTGGCGAACAGCCTTACGAGTGTACCGAGTGCGGCGCTCGCTTCGCTCTCCGGGCGAAGGCACACATGCACTTACGCACACACAGACGGACTCATACAGGCGAAAAACCATACAAGTGTCCTTTGTGCGACCGAAGATTCACACAATCCAGCGCAATAAAACTTCACATCACCACTGTGCACTTGAAACTGCCTCCTCCGTATAAAAGTAGGTCGCGTGCCGAACGGCCCACCAAGCCTAAAGAGCCGTGGAAACCACGCGCGGGGCTAGTTCCCCCCATGAGCCTCGAGCTACTCCAGTCATACGTCCTCGGACCATGGAAGAATGATCTGCAGATGTTAAAGGCGGTGTTAGACGCGAATAATAGGGATGGGGATGAGTCGGACGCAAATGAGGAAATGAGAGAGGTTTCATGCGACGAAGAAGTGAGGGATGTCAAGGTCGAAGATGGCATGTTCGGAGGTGAGGAAGAGGTGATAGAGGAGCCGTGTTATAGTGATTGA
- Protein Sequence
- MSGELLLYVANNVELCENLETASTIIKTDSPAPDCKVPPATSDTEVPIAPASVCRICLRADIAMCADMDDTLEVFYDELIYFDSYEHEALSYCQLCEYQLRRLYNFRQKCRRAHILLKAKGADLFGPEEIKKIQNIIPRSSIGICTAKSKQMVYFTTSKANNLENSIEDAPDIEPNDDKDATSFSSVDNFSLLIKKIGCDDILKLEKGGLYSMENNYPQNDLKSYIQDFLKNEDSVFDVGDDIQNDHENNTTIKRKRKRKKVPKLILTKSEKVIRRKRKSMENFKEWVLLVIKRGELDGIEDLGQKINEEVVGKLFDKCPMGTFIQTGLHHFSDSKIPKMRRFLQSLLQRYNPLYEDMFDVTYLHTKEKQMEEFNARQNSPEYKYAVFKCHICYQVFELQGLLDFHMKWHDESKPHVCPICSMRFEKEKPLKKHITVRHREKYSCKLCPFVTYGHKTMRSHYRDHKRVLYTCPECDKKFCKITTMQNHVRYTHRLNSICSFCGRRLPSDVQLKRHMAERHSDVTAETLASTPTECCNNCKAAFYSREALLYHAATSHRPTYNEEKKVSYSCFYCKVDFETVEALYTHKRSEEHRDTMQHVGEGAKKGIRRSHRTCPLCNVEVVNEHPRSLYEHYRAAHPAAPYHPEPGGQAFLCEQCGKTFTHYRAAHPAAPYHPEPGGQAFLCEQCGKTFTHYRAAHPAAPYHPEPGGQAFLCEQCGKTFTHYRAAHPAAPYHPEPGGQAFLCEQCGKTFTLKHLYLDHLNLHSGEQPYECTECGARFALRAKAHMHLRTHRRTHTGEKPYKCPLCDRRFTQSSAIKLHITTVHLKLPPPYKSRSRAERPTKPKEPWKPRAGLVPPMSLELLQSYVLGPWKNDLQMLKAVLDANNRDGDESDANEEMREVSCDEEVRDVKVEDGMFGGEEEVIEEPCYSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429608;
- 90% Identity
- iTF_01429608;
- 80% Identity
- iTF_01429608;