Basic Information

Insect: Thera obeliscata
Gene Symbol: -
Assembly: GCA_947578465.1
Location: OX387926.1:208274-219462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.035 2.2 9.3 2.1 1 23 294 316 294 316 0.98

2 7 0.84 51 5.0 2.1 1 23 323 345 323 345 0.86

3 7 0.00011 0.0066 17.2 0.4 2 23 352 373 351 373 0.96

4 7 3.7e-05 0.0023 18.7 3.5 1 23 379 401 379 401 0.98

5 7 0.00026 0.016 16.0 2.2 1 23 407 429 407 429 0.96

6 7 6.8e-06 0.00042 21.0 2.4 1 23 435 457 435 457 0.97

7 7 6.5e-05 0.004 17.9 2.8 1 23 481 504 481 504 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.035	2.2	9.3	2.1	1	23	294	316	294	316	0.98
2	7	0.84	51	5.0	2.1	1	23	323	345	323	345	0.86
3	7	0.00011	0.0066	17.2	0.4	2	23	352	373	351	373	0.96
4	7	3.7e-05	0.0023	18.7	3.5	1	23	379	401	379	401	0.98
5	7	0.00026	0.016	16.0	2.2	1	23	407	429	407	429	0.96
6	7	6.8e-06	0.00042	21.0	2.4	1	23	435	457	435	457	0.97
7	7	6.5e-05	0.004	17.9	2.8	1	23	481	504	481	504	0.95

Sequence Information

Coding Sequence: ATGGATCCGCACGGCGGCGGCGGCAGCGCGCTCGAGGCTCGCGTGAAGCTGGAGCAGGAGCTGGAGCAGGAGGTGGAGGTGAAGCTGGAGCCGGGCGCGGCGGGTGCCGAGTGCGTGGTGTGCGGCGCGCGCGCGGAGGACGCGCGGGCGCTGCGCGGCGCGCGCACGGCTCGCGCGGGCACGGCGCTGGCGGCCTACCTGGCGCGCTACGCGGGTGCCGGCGCGCTGGACGCGGAGGCTGGCGCGCGCGCCGTGTGCCGCGCCTGCCTGCACCTGGTGGACGTGCTGGAGCAGGCGGAGCTGGAGTACCTGCGCCTGCGCGACGCCTTCGAGGCGCTGCTCAGCCGCAACCCGCTGTTCGCGCCGCGCGCGCGCCGAGCCGCGCCCGCCAGCACCCCCGCCAGCATCCCCGCCAGCACGCCCGCCGTGCTGTGCGACGTCAAGTGCGAGCGCGCCCCTGACGAGGACTCCGAGGATGAGCCGCTCGCGCGCGCCAAGAAGAAGCACGCTGCTAAGGGAATAAAGAAAAGAAAAAAAGTGACTTCCGCGATAAAGAAGAGAAAAAGTTTGATCTCCGATAAGCAAAGTTGGGAGTGTGATGAGTGCGACGTGCACGGAGACTCGGGCGGCTCTCTGGCGCTGGCGGCTCACAAGATCACAGAGCACACTGAAGTTGCTGATATCAAGACTGAAGATAATGATATTGATGCTGAAAGGTCTCAAAGTCCTTATAACAATGGAATAGACAATTGCTCCGAAGTTGCTTATGGTGATTTTGATAATGATGATGCTGATAGTACCTTTAATCCGGATGACTTCCTCTTAGAACCCAGAAAGAAGGAGAAAACGAAAAATAGTTTCAAACGACCCAAAGAGTGGCATCAATGTGACCAGTGCAATGCTAGGTACTCCTCTATTGGTCGGCTAGCTCAACACAAAAAGAAACACGATTGCTCCAAGCCGCCCTACATCTGCGAGGTGTGCGGGGCGCACTACAAGCACAAGCGCGCCTGCGACATACACATCGCGCTACACAAAGGGATAAGCGATTGGAAATGCGAAGAGTGCAATAAACTGTTTCCGTCCAAAAACGCGTTGCAGCGACACAATAATATACACACAGGCAAACTCAACTATCAGTGTGACTTGTGCGGCAAGTCGTTTATCCACACGTCTTCGTTCAAGATGCACAAGCTGTCTCACTCCGGCGTGAAGCCGCACGCGTGTGACGTATGCGGCCTGGCGCTGATGACGCGCTCGCATCTCAAGCGGCACAAGCGCATCCACAGCGGGGAGAAGCGGCACGAGTGCCACGTCTGCGGGAAACGGTTCTCGGAGCGCTACAACCTGGCGGCGCACGGCAAGTCGCACGAGGCGCCCCCCGCGGGTGGGGGCGGGGGCCCCTCCGGCGGGGAGCCCCTCGCGCCGCGGCGCCGCCTCTTCCGCTGCCACTTCTGCACGGAGCGCTTCGAGAGAAGGTACATGCTGGAGCGGCACATGTCGGGCGCGCACGGGCGCACGCTGGAGCGCGTGCCGGCCACGCCGCGGAACACCATGAGCAAGCTGCTGAAGGCGCAGGCGCAGGCGCGGCTGCAGCCCGGGCCCGCGGGTACGTACTGCCACATGTCGGCGGAAGGCGACTCCAAGGACGGCGCCGCGGCCGGGGCCGGGGGCGCGCCGCCCTCCAAGCTGCTCGCGCATCTCAGTACGTGCCGCGCCTCGCTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCGCTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCGCTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCGCTACACTCGCCTCACTACACTCGCCTCACTACACTCGCCTCGCTACACCCGCCTCGCTACTCCCCGCACTCATGCCCACGGAGCCTCCACGGGCTGCACTGAATTGCTTCTCATAA
Protein Sequence: MDPHGGGGSALEARVKLEQELEQEVEVKLEPGAAGAECVVCGARAEDARALRGARTARAGTALAAYLARYAGAGALDAEAGARAVCRACLHLVDVLEQAELEYLRLRDAFEALLSRNPLFAPRARRAAPASTPASIPASTPAVLCDVKCERAPDEDSEDEPLARAKKKHAAKGIKKRKKVTSAIKKRKSLISDKQSWECDECDVHGDSGGSLALAAHKITEHTEVADIKTEDNDIDAERSQSPYNNGIDNCSEVAYGDFDNDDADSTFNPDDFLLEPRKKEKTKNSFKRPKEWHQCDQCNARYSSIGRLAQHKKKHDCSKPPYICEVCGAHYKHKRACDIHIALHKGISDWKCEECNKLFPSKNALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHACDVCGLALMTRSHLKRHKRIHSGEKRHECHVCGKRFSERYNLAAHGKSHEAPPAGGGGGPSGGEPLAPRRRLFRCHFCTERFERRYMLERHMSGAHGRTLERVPATPRNTMSKLLKAQAQARLQPGPAGTYCHMSAEGDSKDGAAAGAGGAPPSKLLAHLSTCRASLHSPHYTRLTTLASLHSPHYTRLATLASLHSPHYTRLATLASLHSPHYTRLATLASLHSPHYTRLATPASLLPALMPTEPPRAALNCFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -