Tobe003539.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387926.1:14961275-14967586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4e-05 0.00088 20.0 0.9 2 23 167 189 167 189 0.96 2 16 4.6e-05 0.0028 18.4 1.0 1 19 193 211 193 212 0.96 3 16 7.3e-05 0.0045 17.8 0.5 1 23 221 243 221 243 0.97 4 16 0.006 0.37 11.8 0.4 1 23 249 271 249 271 0.97 5 16 5.7e-06 0.00035 21.3 0.1 1 23 277 299 277 299 0.95 6 16 0.038 2.3 9.2 0.2 1 23 305 327 305 327 0.96 7 16 1.9 1.2e+02 3.9 0.1 1 17 333 349 333 350 0.89 8 16 3.2 2e+02 3.2 0.1 1 16 372 387 372 388 0.90 9 16 3.2 2e+02 3.2 0.1 1 16 503 518 503 519 0.90 10 16 6.4 3.9e+02 2.2 0.0 1 16 678 693 678 694 0.88 11 16 3.2 2e+02 3.2 0.1 1 16 809 824 809 825 0.90 12 16 3.2 2e+02 3.2 0.1 1 16 940 955 940 956 0.90 13 16 3.2 2e+02 3.2 0.1 1 16 1071 1086 1071 1087 0.90 14 16 3.2 2e+02 3.2 0.1 1 16 1115 1130 1115 1131 0.90 15 16 3.2 2e+02 3.2 0.1 1 16 1246 1261 1246 1262 0.90 16 16 0.0011 0.069 14.1 0.3 1 23 1366 1389 1366 1389 0.98
Sequence Information
- Coding Sequence
- ATGGATGTATTAAGTCTGTGCCGCGGTTGCATGAAGGAAGTAGCTTCATGGGAAAAAGAAAATTTCAGCGCGCGAGCTGTGGAAATGTTTAGTTTTTGCACCAACCTCAGGATAACAGAAGAAGATAAACTACCGCAGCAGTTCTGCTACGACTGCGTCATTAAAATAGAATCTTCATACACCTTCATCACAGAAGCCCAGAAAGTACATGTCACTCTTAAGAACATCATATCCCGGAGTGATACAAGTATCATCATAGAACCAGAGAAGTGTGTTAAATCACACAACCCTGACATAAAATTAACCTTGCCAGACTACAAAATATGCAGCGTGATTGAAGATTCTAGAATTTACAAGCCTGTTACAAAAAATCTTGAAGAATCCAACAGTCAAGCTCAAGCTGAAACAGATGTTGTTGAAAGCTTTGAAGAAGTTGAGTCAGAGAAGAAAGAAGAAGTAGAAAGCGAGAGTATTGTGAAGAAACCCAATAATAGTAATGTATGTCCGGTGTGCCGGAAAAGCTTTACATCCAAGACTTGGTTTGCCAAACACATGCAAAAGGAACATGTTAGGAAATATGCATGTCCACATTGTTCTAAGAGTTTCACCCGCGCCTCCCAGCTGAGCAGCCACTCGGTGTGTCACTCGGAGGAACGCAAGTTCGTCTGCAGCGCGTGCGACAAGCGCTTCAAGCGACGCAAGCAGCTGGCGGCGCACGCGCTCTCGCACCGAGACGTGAGGCCTTACGCCTGCGACCAGTGTGCCGCTAGGTTCAAGACAAAAAGCATACTGAAGAGTCACATGTCGGTACACGAGAAAGATAAAGCATTCCTTTGCTATTTCTGCGGATGGAGTTTTGCTCAAGCGGGTAACCTAAAGGTGCACATCCGAGTGCACACCGGCGAGAAACCATACGCGTGCTTGCGCTGTCCCTTCCGCAGCAGCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCACACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAACTCTTCCAGGACACCAGCAACCTGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAACTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGACACGCGCGCGCGCACGCCAGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACATCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAGCCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAACTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAACTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGACACGCGCGCGCGCACGCCAGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACATCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAGCCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAGCTCTTCCAGGACACCAGCAACCTGGTATGTATACACAGCATGCGAGCTGCCGTACCGGCGCGTCCAGCCTGCGTCGCCACGCGCGCGCGCACGCCGGCCTGCGCCCGCACGCCTGCGCGCGCTGCGGGAAACTCTTCCAGGACACCAGCAACCTGACACCTGTTCCCAGGCCCGTCACATCCGCACGCACACAGGCGCGCTGCCGTACAAGTGCGGTACGTGCGGAGCCGCCTTCTCCGACAGCTGGAAGCGGAAGGCACATCTCATGCGCACTCACAAGGTGCCGCTGCACGACATACCCAGGATGGGTCGGGATGGACAAGTTCTACACTGA
- Protein Sequence
- MDVLSLCRGCMKEVASWEKENFSARAVEMFSFCTNLRITEEDKLPQQFCYDCVIKIESSYTFITEAQKVHVTLKNIISRSDTSIIIEPEKCVKSHNPDIKLTLPDYKICSVIEDSRIYKPVTKNLEESNSQAQAETDVVESFEEVESEKKEEVESESIVKKPNNSNVCPVCRKSFTSKTWFAKHMQKEHVRKYACPHCSKSFTRASQLSSHSVCHSEERKFVCSACDKRFKRRKQLAAHALSHRDVRPYACDQCAARFKTKSILKSHMSVHEKDKAFLCYFCGWSFAQAGNLKVHIRVHTGEKPYACLRCPFRSSGASSLRRHARAHAGLRPHACARCGKLFQDTSNLHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTPATWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTPATWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHARPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDISNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTPAAWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGNSSRTPATWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTPATWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVDTRARTPGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTSATWYVYTACELPYRRVQPASPRARARRPAPARLRALREALPGHQQPGMYTQHASCRTGASSLRRHARAHAGLRPHACARCGKLFQDTSNLVCIHSMRAAVPARPACVATRARTPACARTPARAAGSSSRTPATWYVYTACELPYRRVQPASPRARARRPAPARLRALRETLPGHQQPDTCSQARHIRTHTGALPYKCGTCGAAFSDSWKRKAHLMRTHKVPLHDIPRMGRDGQVLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -