Tobe022916.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387921.1:17911518-17913518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.73 45 5.2 0.4 2 23 396 418 395 418 0.94 2 9 0.00013 0.0082 17.0 0.7 1 23 440 462 440 462 0.98 3 9 0.00026 0.016 16.0 3.4 1 23 466 488 466 488 0.98 4 9 0.25 15 6.7 2.5 1 23 493 516 493 516 0.93 5 9 0.18 11 7.1 0.6 2 23 524 546 523 546 0.88 6 9 0.0013 0.077 13.9 1.3 2 23 554 576 553 576 0.95 7 9 3.5e-05 0.0022 18.8 8.6 1 23 582 604 582 604 0.98 8 9 2.1e-06 0.00013 22.6 0.7 1 23 610 632 610 632 0.98 9 9 0.011 0.7 10.9 0.9 1 23 639 662 639 662 0.91
Sequence Information
- Coding Sequence
- ATGGAATATACAATTCGTACTTTATTTATAGGTCTTGCTTCCAAAACTCGTGGAAGAAAATCTACAGTAAGTACTAGTTCTAGAAAGAGCAAAGTTAAAGGCACAGACAAAAGTAAAGCTGATGGTGCTTTAAAAACCAGAGAAACGAAAGGTGATGCTAAAAACAGCAAAGCAACGACCAAGGTCGATGATGCCAGAAAAATCAAAGATGCTGAAAAAGTTGATGGTGCTAAAAATAACAAAGTATCGAAAGAAGCCGTTATTACCAAAAGTAGCAAAGAATCAAAGAAAGTAGATGATTCTAAACAAAACAAAGTTACGACCAAGGTTGCAGATGCTAAAGATAGAAAAGATGTAAAGAAAGTGGATTCTAAAAAACTAAAAGTAACGACAAAGACAGTTGATCCCAAAAAGAGCAAAGAATCAAAGAAAGTAGACGATGCCAAAAACAGTAAACAAACAAAAAAAGTTGACGATGGCAAAACGAGCAAAGCATCGAAGAAAGTTGGCGATGCTAATAAGAAAAATGAAAAAGCCGAAATTATTGATCTGTCTAAACATAAGGAAAAAGAACTGATAAAAGGCGGTGATGTTATAGAAATTCAAGAAGACGTTTCCAAAACTTCAAAACAGAAGAAATCAAAGAGCAAGAAAAAGTCGAGAAAAGATGCCGGTGAGATAGAAACTTATGATGATGATAATTCGAAAAGCTGTAAAAAGAAAAAGTCTAAAAGTAAGGAAAAAATGAAGTATGCTGATTTGATTAATTTACTTGATCAAGTTCCCGAATGTGATATAACTGAAACCAGAAAAAAAGTTGTGGACGACGACGATGTGATTGTACTTCCTGCGCCCAGAATGGGTAAAACTGGGAGGGTTGCTAAATACGTCGAAGGTTTCGAGATCCACACGAGGGCTCAAAAGGATGATGATTTCTACGCTATACAGCTCACTGAATTTGAAAAACATTTGCACAATATACGAACGCTATTAATGCATTCCAATGCGACTCCAATACAAAATCACAACGAAGCGGGCTTTAGTTGCGgtttctgcgttgaccaattcctcactgctgctgaactaaaattccacacgcttgaaaaccacggcgatgatgtaaaaagattcaagggcggacacactatattctcatacgtggtcaaactagacataacttcattgcgctgcgtcctgtgcacgcgtaaaatcttcacccttgagctgctaatggaacatctggagactaagcacgatatagaatttcataaggatataaaaaatcaaatactgccgttcaagtttcaaagcgacatcttctcttgcgtcatctgcgatcgtcggttcgatcgtttccaacaaatgcaatggcacatgagcgtccactacaggaacttcgaatgcgatcactgtcaagcggcgttcatcaacaaatccacactgagtactcatcttcatagacatcaaatcggcgtcttcaaatgccggttttgcaccaaggtttacgatacaaaaggcaagaagagcgtccacgagaaatacgtacacattcaaacacacaagcgaaacaaatgcacctattgcgacgagttcttcatgagataccccaagaagttgcagcatatggtcgaggtccatggtcataaaccgcgtgttgtgaaatgcaacgcctgtgacaaaacgtttgaaaccaaagaaaagctttcaatgcacaataaaagagaccacatgatggaacgtaatcacaaatgcgaaatctgcgagaagtgcttcttccataactatgacttgacgcgacatttgcgctcgcacatgaccgctaaaccgtttatttgcgaagtttgcaataaaggctttaatcggaaggataatctgttggagcactcgcgcactcacactggggagaacataaggttcagttgtgatcgctgtggtcTAAACTTCCGTTACATGGCTCGTTTGAGAAGACACACCGCTGATAGGCATAAGGACGAAACCTAG
- Protein Sequence
- MEYTIRTLFIGLASKTRGRKSTVSTSSRKSKVKGTDKSKADGALKTRETKGDAKNSKATTKVDDARKIKDAEKVDGAKNNKVSKEAVITKSSKESKKVDDSKQNKVTTKVADAKDRKDVKKVDSKKLKVTTKTVDPKKSKESKKVDDAKNSKQTKKVDDGKTSKASKKVGDANKKNEKAEIIDLSKHKEKELIKGGDVIEIQEDVSKTSKQKKSKSKKKSRKDAGEIETYDDDNSKSCKKKKSKSKEKMKYADLINLLDQVPECDITETRKKVVDDDDVIVLPAPRMGKTGRVAKYVEGFEIHTRAQKDDDFYAIQLTEFEKHLHNIRTLLMHSNATPIQNHNEAGFSCGFCVDQFLTAAELKFHTLENHGDDVKRFKGGHTIFSYVVKLDITSLRCVLCTRKIFTLELLMEHLETKHDIEFHKDIKNQILPFKFQSDIFSCVICDRRFDRFQQMQWHMSVHYRNFECDHCQAAFINKSTLSTHLHRHQIGVFKCRFCTKVYDTKGKKSVHEKYVHIQTHKRNKCTYCDEFFMRYPKKLQHMVEVHGHKPRVVKCNACDKTFETKEKLSMHNKRDHMMERNHKCEICEKCFFHNYDLTRHLRSHMTAKPFICEVCNKGFNRKDNLLEHSRTHTGENIRFSCDRCGLNFRYMARLRRHTADRHKDET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -