Tobe023372.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387921.1:23249746-23252300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.31 19 6.4 0.0 2 20 119 137 119 139 0.92 2 17 6.3e-05 0.0039 18.0 1.1 1 23 169 191 169 191 0.98 3 17 0.027 1.7 9.7 1.3 3 23 197 218 196 218 0.94 4 17 0.011 0.67 10.9 2.9 3 20 223 240 221 242 0.93 5 17 0.00071 0.044 14.7 0.3 1 23 251 274 251 274 0.94 6 17 0.00026 0.016 16.0 5.1 1 23 280 302 280 302 0.98 7 17 9e-05 0.0055 17.5 1.3 1 23 309 332 309 332 0.97 8 17 0.00059 0.036 14.9 0.6 1 21 345 365 345 369 0.92 9 17 0.051 3.1 8.8 0.3 2 21 484 503 483 504 0.92 10 17 3.4 2.1e+02 3.1 0.0 2 20 509 526 508 530 0.80 11 17 6.3 3.9e+02 2.3 1.6 3 23 537 557 535 558 0.92 12 17 0.00091 0.056 14.3 0.7 1 23 563 585 563 585 0.97 13 17 0.17 10 7.2 11.7 1 22 588 609 588 613 0.93 14 17 0.00043 0.026 15.4 1.5 1 23 620 643 620 643 0.93 15 17 5e-05 0.0031 18.3 3.7 1 23 649 671 649 671 0.98 16 17 1.1 67 4.7 3.6 1 23 705 728 705 728 0.94 17 17 0.0024 0.15 13.0 0.6 1 23 736 759 736 759 0.91
Sequence Information
- Coding Sequence
- ATGGAGATCACGCCAGGGATCCCGCACCAAGTCTGCCATCACTGTGCGTCTGACGTCACGGCTTTCCTGCCTTTCCTACAGCTGTGTCGAGACTCAGCCACAAGATGGAACTATATATCTGAACGCTTGATCGATATCTCCACTCAAACTAAAGCTAACACAGCATTTATCTTTGTAACTGATGATGATAACATGCGAACCGTGCTAGAAAGAAGAGGAAAAGCAAGTAATTGCGACGCGAATAATGTGAAAACGCGGGTAAATCGTCTACGAAAGGAAAGTAAAGAAAAACCTAGAAAGACGGTTCTCACAGAAGAGTTTGAAGGAATCGAACAGTCGAAAACCAGACTTCCCAGCTGTGAGGAATGTGGAGCGGAGTATAGAAAACTGTCTGAGATCAATCTGCACCTGGCGAGCCAAAACAAGAGGGTATGCGGACGATGCCACAAAGTAGTAAAACTCACAACCTTTGCAGATCACTTGCAACAGCATTGCATACCTTTCTTCAAATGCACAGTTTGCTCGTTCCCTTTCGAGAGCAAAGAGCAGCTAGAGAAGCACAAAAACGTTCATTTAGGAAGGAACATGTGCTCGGAATGCAAGAGAACCTTCCCAACACCAGATATACTAACTCTGCATGTGCACAGAAAGCACGAGGCTGATATTTGCAACAATTGCAACAGAAAGTTTTCCAATCGAATCTGCTTGTTCAAACATAGAAGCAATTGCAGGTCCGAAGCACCGAAGAAGTTTGTCTGCGATTATTGCTCCAAGGAGTTCAGCGATAGAAGCGTCATCAAATCGCATATAACGTTGGTTCATGCCAAGAAGTTGAACCATCAGTGCGAACTCTGCGGGAAGCAGTTCAACAGCGCGTGCCACCTTGAAGAGCATTACGAGACTCATGACGTTGTACTAGACAGATACGTGTGCGCGTATTGCGATAATAAATATAGCACGTCTGGTGGATACAGAAGGCACATGAGACAGAAGCATTATACCTTAAACCAACAGCTGAAGAACAACGCTAAGTACTCGTGTGATATCTGCGCGAGGAACTTCATCAGTGAGAAGAATTTGAACAATCATCTCAAAGCGAAGAAACATACACTAAAGAACTTGAAAACGAAATGGCAAACAGACGCCAGCGGTGTCGACGAAGACGTGGGCGTGCTGCCGCCGGGGCTGTGCGGCGCATGCGCGGGGGACGCGGTGCGCGCCGCCAACTTCAAGCATCTCCACGCGCGCTCCGCCGCGCGCTGGAGCCAGGCGGCCGCCTACCTCGCCGGGATCCAGCTCGAGACCGACGACCGGACGCTGTTCCTCATGTGCGATGACAACGACATCGTCATATGCGAGAAGCAGTTCGACAACGTAGCCGCCGCCGCCACCACCCTCAGATACTTCAAGAAACCCAAACGGAAAACCAAACGGAAGGAGATGACTTGCGCTTGTCCATCCTGCGAGAAGACCTTCCTATCGGCGGACGCGTTGAACGAACATCTCAAGAGAGGAACGAGAAGCGTCTGCACGGAATGCGGGCTGGTGTTGAACAAGGCTGATTTGCCGCGGCATCTAGTCGACGCGCATCAGACCGAGACCGTCCATTGCAGCATCTGCTACGATCTGTTCACCAACTACGGCGACGCGAACTGGCACATGACGCAACACCACGGGCCGCAGTCCTTCACTTGCGGCGAGTGCGGCCGCGGCTGCCGCAGCGAGCGAGGCTTGCGGGCGCATTGGTACTCGCATACCCTATTCTGTTGCGCGCATTGCGGCCGGAGCTTCGAAAACAACCGCTGCTACCGCCATCACCGACGCACCTGCAACGGGCACCGACAACCTTTCAGCGAGTTTGAGTGCGACCACTGCGGCGCCAAGTACAGCAAGAAACCATCCCTGAAAACCCATATAGTCCAGAAACACGTTCGCGTGCTCCCCTTCGTCTGTCGAACGTGCGGGAAGCGGACTTCAACCAAAGCTCATCTAAGATCTCACGAGAAAACGCACGATGCTGACAGGAAAGTGCTGGAATGCCACTGCGGGGCCAAGTTCCGCTCGGAGTTGGGGCACCGCCTGCACCAGCGGGTCCACAGTGGCCTCAAGCCTTACAAGTGCACGCACTGCGAGGACACCTTCATCTCGTCCTCGCGGCGCCTGGACCACGAGAAGAGGAAGCATCAGAGTAGGCGGGACCTTGCGCATGCGTGCGCGGAGTGCCCGGCGCGCTTCATCCGGCCGTGGGAGCTGAGGAAACATTATGCGCTCTGCCATACATAG
- Protein Sequence
- MEITPGIPHQVCHHCASDVTAFLPFLQLCRDSATRWNYISERLIDISTQTKANTAFIFVTDDDNMRTVLERRGKASNCDANNVKTRVNRLRKESKEKPRKTVLTEEFEGIEQSKTRLPSCEECGAEYRKLSEINLHLASQNKRVCGRCHKVVKLTTFADHLQQHCIPFFKCTVCSFPFESKEQLEKHKNVHLGRNMCSECKRTFPTPDILTLHVHRKHEADICNNCNRKFSNRICLFKHRSNCRSEAPKKFVCDYCSKEFSDRSVIKSHITLVHAKKLNHQCELCGKQFNSACHLEEHYETHDVVLDRYVCAYCDNKYSTSGGYRRHMRQKHYTLNQQLKNNAKYSCDICARNFISEKNLNNHLKAKKHTLKNLKTKWQTDASGVDEDVGVLPPGLCGACAGDAVRAANFKHLHARSAARWSQAAAYLAGIQLETDDRTLFLMCDDNDIVICEKQFDNVAAAATTLRYFKKPKRKTKRKEMTCACPSCEKTFLSADALNEHLKRGTRSVCTECGLVLNKADLPRHLVDAHQTETVHCSICYDLFTNYGDANWHMTQHHGPQSFTCGECGRGCRSERGLRAHWYSHTLFCCAHCGRSFENNRCYRHHRRTCNGHRQPFSEFECDHCGAKYSKKPSLKTHIVQKHVRVLPFVCRTCGKRTSTKAHLRSHEKTHDADRKVLECHCGAKFRSELGHRLHQRVHSGLKPYKCTHCEDTFISSSRRLDHEKRKHQSRRDLAHACAECPARFIRPWELRKHYALCHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -