Tobe014020.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387917.1:20360216-20372224[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0004 0.025 15.4 0.2 2 23 46 67 45 67 0.93 2 11 0.00059 0.036 14.9 2.4 1 23 73 95 73 95 0.96 3 11 8.1e-06 0.0005 20.8 0.2 1 23 197 219 197 219 0.98 4 11 2.9 1.8e+02 3.3 0.2 2 23 226 248 225 248 0.88 5 11 0.00053 0.032 15.1 0.0 3 23 300 321 298 321 0.90 6 11 0.049 3 8.9 0.6 1 23 332 354 332 355 0.93 7 11 2.5e-06 0.00016 22.4 0.2 1 23 385 407 385 407 0.98 8 11 0.00063 0.038 14.8 0.2 1 23 413 435 413 435 0.97 9 11 0.00035 0.022 15.6 0.3 1 23 441 463 441 464 0.95 10 11 0.041 2.5 9.1 0.4 1 23 479 501 479 501 0.97 11 11 0.014 0.85 10.6 0.0 1 20 645 664 645 667 0.93
Sequence Information
- Coding Sequence
- ATGGATATGTCTATTGATCATTTAGAAAACACAGTAGAACTGAATATTAAAGAAGAAAATGATGTAGATCCACTGCCAACAGATCAAGAAATCAACCTGCATTCCCAAGACGAGTACACAGCAATGCGTCCATGGCCGTGCGACTTTTGCTCGCGTCGTTTCCGCAAGAAGGCTGCTCTGATGAACCACATGGTGGCACATCAGAATGACAGACCCCATGCATGCAACCTCTGCGGCGTGCGTTATGTACGCAAGTGCGATCTTATGAACCATCTGAAGGTGCATGCCTTTGTGCCTGATAATGCTGACTCAGTGGATTTTGAAGAACTGCTAGAAAATAACCAAATCGTGAAACCAAAGAAGAAGCGCGGACGTCGGAAAAAGATACCCGAGCCAGAAGAGGATGAGTGGGAGAACATGACGTCAGCGCGAACCCAGCAATGGTCCCGCCGTGGTCGGTCCCCCGCGAAGCCGCCACCGTCACCGCCGCCGCCGATGTCGCCGCCGTCACCGCCGTCGCCGTCATCTCCGCCGTCACCACCGTCGCCGCCGTCACCGCCAATGCCACCAGCTGACCCGTCACGCCCGTTCGTCTGCAAGACTTGTGGCATCGCCTTTGCGAGACAAAAGGCGTTGCAGTCCCATTCTAGGGTGCACGGCGGCGACTCCCCGGTGGAATGCGAGGAGTGTGGCGAGCTTTGCTGGTCGCGGGAGGCGCTCGCCACGCATGCCAACAATCGACATCCGAACCTACCGCCGCGGACTGCGCAACACACCAACTACAATGAATCAGACTCAGGCGATGACATGGACTTCCGTCTGTCTCCCGAGTGCCCCGCCGGCGTGGAACGGGCGCCGCCGCTGCTGTATGAGTCGATGCGTGGTCCCGAGCTGTTCTGCCCCGACTGCGGCGTTGCCTTCCAGCGGACCGACCTGCTGAGACGTCACGTTGCCGCCGCGCATGCCTACAAGCGTGTGTCGGCGTGGGGCGAGCACACTTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTCCAGCTGTTAGCGCACGCGGAACTGCATCACGACCAGCCGCGCACTACCAACGCGCACAGATTAAAAAAATCTCCCAAGGGACGTAATAATTCGGCGATATCGAGTAATTCACGGCAATTCCCATGCAAGGAGTGTGGCAAAGTGTTCGGATCGCGCAGTTCACAGCAGATTCACATTCGCATCCACACGGGCGAGCGACCGTATGCATGCCGGTTCTGTTGGAAGGCATTTGCGGACGGAGGCACGCTCCGGAAACACGAGAGGATACACACGGGTGAAAAGCCATACGCATGCGCGGTGTGTCCGCGTGCGTTTAACCAGCGCGTGGTCTTGAGAGAACATGTGCGTTCTCACCACTCGGCGCCGGACCGCAGGCAACAGGCTAATGGTGGATCGGCGTATTCGTGCGTGGTTTGTTCGCGCTCGCTTCACTCGAGCGTTGAATTAGTACAGCACCTCATTCAACACTGCGACGCCAACACAGCGTTGAAAAGACAACCACAGAACGGGCCGCGGAAATACAAGCGTCGGCGGAAGATAAAGAGCGAGGCGATATCTCCTGCGCGGCGCGAGTGGGCGCCCTCCTCCCCCCCGCCGGCTCGCAGCCCCTCCCCCCGCGCGGCCGCCTCCCCCTCCCCCTCCCCGCCGCCGCCGCCCCCTCCCCGCTCGCCCCCGCGCCGCCGCTCCCGCCGCGAGCCGCCCGTTCGACCACGCATGATACACACCTCGGAGCAGACTAAGGCGAACGCTAAGCTTAAGACGTTACGTCAGCGCCGGCCGCCGCGTCACCCGGCAGACGACCTTCGAGCCATCGGACCACACTCACCATCTCCGAAACGAGAGCTCAGCTCGCCTCTCACATCGTCGCCCGAGGCCACTCCCGACGCAGGAGCCCCGTACAAATGCGAAATGTGCGCGGAAGAGTTTCCACGGCGAGACGCGTTGCTACTACACGTGCCTGTACATATATGA
- Protein Sequence
- MDMSIDHLENTVELNIKEENDVDPLPTDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNADSVDFEELLENNQIVKPKKKRGRRKKIPEPEEDEWENMTSARTQQWSRRGRSPAKPPPSPPPPMSPPSPPSPSSPPSPPSPPSPPMPPADPSRPFVCKTCGIAFARQKALQSHSRVHGGDSPVECEECGELCWSREALATHANNRHPNLPPRTAQHTNYNESDSGDDMDFRLSPECPAGVERAPPLLYESMRGPELFCPDCGVAFQRTDLLRRHVAAAHAYKRVSAWGEHTCDACGEACSDALQLLAHAELHHDQPRTTNAHRLKKSPKGRNNSAISSNSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQANGGSAYSCVVCSRSLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKIKSEAISPARREWAPSSPPPARSPSPRAAASPSPSPPPPPPPRSPPRRRSRREPPVRPRMIHTSEQTKANAKLKTLRQRRPPRHPADDLRAIGPHSPSPKRELSSPLTSSPEATPDAGAPYKCEMCAEEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377360;
- 90% Identity
- -
- 80% Identity
- -