Tobe022908.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387921.1:17831592-17835830[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.022 1.4 10.0 1.3 2 21 18 37 17 40 0.94 2 23 0.0004 0.024 15.5 3.2 2 23 61 83 60 83 0.95 3 23 0.00016 0.0098 16.7 2.7 1 23 88 111 88 111 0.98 4 23 0.58 36 5.5 4.1 1 23 115 138 115 138 0.94 5 23 0.24 15 6.7 2.0 2 23 141 163 140 163 0.95 6 23 0.5 31 5.7 2.6 2 19 170 187 170 190 0.91 7 23 0.0017 0.1 13.5 3.1 1 23 239 262 239 262 0.96 8 23 1.3 78 4.4 0.1 2 23 291 313 290 313 0.87 9 23 0.09 5.5 8.1 0.4 1 23 334 357 334 357 0.94 10 23 0.0093 0.57 11.2 4.0 1 23 405 427 405 427 0.96 11 23 1.6 1e+02 4.1 0.1 3 23 456 477 454 477 0.83 12 23 0.23 14 6.7 4.0 2 23 498 519 497 520 0.94 13 23 0.0037 0.23 12.4 4.7 1 23 525 548 525 548 0.95 14 23 0.00052 0.032 15.1 3.4 1 23 553 576 553 576 0.96 15 23 5.2e-05 0.0032 18.2 2.9 2 23 579 601 578 601 0.96 16 23 0.18 11 7.1 0.9 1 23 687 710 687 710 0.97 17 23 0.011 0.68 10.9 0.2 2 23 785 807 784 807 0.92 18 23 1.2e-05 0.00074 20.2 0.5 3 23 814 835 812 835 0.95 19 23 0.00047 0.029 15.2 3.8 2 23 840 862 839 862 0.95 20 23 0.019 1.2 10.2 0.9 1 23 867 890 867 890 0.97 21 23 0.027 1.6 9.7 6.8 1 23 894 917 894 917 0.95 22 23 0.073 4.5 8.3 1.7 3 23 925 945 924 945 0.96 23 23 1e-06 6.2e-05 23.6 1.5 1 23 951 973 951 973 0.99
Sequence Information
- Coding Sequence
- ATGAAACTAATCAAATGCGGAAATGAAACTAAAGTAGACGTCTCAGAAACTAAATGTAACGTTTGTTCAGAAGATTTTACTGACATCGACGATTTGATAACACATTTGAAATGTAAACACAAGCTGTGGTTTGATAAAGACGTGTCCCTAACTCTCGCGAAATACAGGCTGGCCGATTTGAAATGTCTCGTCTGCGACAAGAGTTTCAAAATGTTCTGTAATCTTGTGCGGCACATGAATCAGAGCCACCCTGATAACTGCTTTCAATGTGATACCTGCAGTCAAAGATTCAATAAAAAGCGTGATTTATCAAATCATGTCAGAACCAATCACAGGAAAGATTACAACTGCCCCAAATGTTCTCTCTCGTTTTCATGCTTTCAAAATCTTCTCAATCATAAAACTAAGGAGCATTTATCTAAGTGCAATCTTTGCTTCCAAATCTTTTCATCGTATAAGAAACGCCTGAGTCACATGAAGGAGGAACATCAATTAAACGATGGAGGGGAGTGTGGTTTTTGTCATAAAAAGTTTCAAACAAAACACGGTTTTCTAGATCATGCCACTAGATGTAAAGTTTCCATCAAAGACGAAGAATCGATTGTGGTCGTTGATGATGAGGATAAGAATGAGGAACTAAGAGTTCTCAGAGCTGGGATAGCTTACATCATCAATATGACAGCTGCTTTGCCTTTTAAGTTCTTGCATAGTAAGTTCAGATGTTTCTACTGCCCGAAATACTTTACAGTTTGCGATGATCTTCGGCAGCATTCGATAACTGAACATCCCGTATGTGAAACAACCTTTCACGCGATGAAGCTGCGTGGAAGATCTGAGGGTGTTAAGATAAAAGTAGACACATCTTCTCTGTATTGCCAAATGTGCTTTGAAAAGTTTACCGATTTCATCGAAGCTATCAACCACTTAGAAGCCGAACACAAAGCCGTTATTAATAAATGCGTTGATATGTTCCGACCTTTTAAATTAGTACATGATAAGTTCCGCTGTGCATCTTGTGATTTAGAATTTAGATATTTTAATTTACTGCTTCAGCACGTAAATGCGAATCACTCCGGCAACCAATATATTTGTACGTTTTGCGATGAAACGCCCGCCCTCCTGATCGACCGAAAAACATCTGAGCGAAGGAGAAAAAACTTGAAAACAATATTCGATAACTCTACAATAATCCCCTTCAAATGGCGAGGAAAGCACATCTGTTTCTATTGTAGCACTCCTTTTAGCAATTATATTGAATTCAGAAAGCATACTAAATCCCACGGTAAATGCAACATAAGCAACTACGCTATGAAAAATCTAAAAGGGAACGGGTTAGCCATTAACGTAGACGTATCCGAAATAGCATGTAAACTTTGCGAGCGCCAGTTTAAAAGCTTAGAAGTTATCGTAGAGCATTTGATAAACGAACATAATTTGTTCTACGACAAGAAGATTTACAGTGAAGTTGTAGAGTACAGATTGATTGACTTGCAATGCACGCAATGTGACCAGCAACTCGATACGTTTAGGCATTTGGTTTCACACGTGAATAAGCATCATCCGCTGAACAGCTTTATTTGTCATCATTGCGGACGAAAGTTCAATAAAAAGAGAGATATAACAGGACATATAAATAACTACCACCGGTTAGGAGGTTACGTCTGTAAAAAATGCGGAGAAGAATGCAAAAGCCGTTTTGACTTGCGAAAACATACAGCGCGTACTCATCTGATGCGATGTCACGTTTGTGACAAGCAGTTCACGAACTTAAATAAACTGCTCAAGCACATGAAGCTTGAACATTCAGACGATGATAACAAGACTTGCCGTTTTTGCATGAAAGAGTTCCATTCTGCGGTTGGCCTGAAAATGCACTTTTCCAAATGCAAAGTGAAATTGATCTCGCAAGACGAAATTGATATCACGCAACATGAAAGTACCTATCCAGAAACCTCCATAAACTCATCGAGAACGCACGAGCAGATTGTGCGTATACGCGAAAACATTCAATGTGTTCTTAACATGTCCACAGCGATACCCTTCAGATTTAGAGTCACATTCTCTTGTTTTTACTGCGCACTGAAGTACGATGATTACGAAGTGCTCAAACAGCATACGCAAACTGAGCATCCCATATGCGACATCAAAAGTAAATCTATGAAGAAGTGTAAAGGGAAACGCACGTTCGTCCGAGTCGATATAGCTGATCTAGCTTGTAAACTGTGCTCTGCACCCATGCCTGATTTAGAACACTTTATCGATCACGCCATCTCGGTCCATGACGCGGACTACGACAAAGCTGTCAGTATCGAGACTTGTTTTGAACCTTATCGGTTAATCAAAGGCAACATTCCATGTCTGGAGTGTCCCAAAGTTTTCCGATATCTAAACACGATGCTGAGGCATTTCAATTTAGAGCACAGCAATAATAATGTAATTTGCGATTACTGCGGCCGTGGATTCCGCAGTAACACCAATCTAAAGATGCACCTTCAAAACACCCACACCGGTTCTTGCGAATGTAAAATTTGTCACGCCAAATTCAAGAACCAATCCGTCCTGGTTCGGCACATGGCCAAAACCCACGATGTGAAGACTTTCAAATGCGCAAATTGTTCAGAAATGTTCGAGTCTGAGTACCAGAGAAAGACGCACTTGATCAAAGTTCACGGTATCGGCCACAAGTGTGAGTACTGTGGTAAGATGTTTACGAAACACTCCTTTAAAGACTCGCACGTTAGGCGCACGCATTTGAAAGAGAAAAACGTAGCTTGTTCTGTTTGCAACGATAAGTTCTTTGACAATCATCTGCTGCGGATGCATATGGTTAAGCATGATGGTGAACGAAAGTACAAATGCGAATTGTGTGGTAAAGCGTTTTTAAGGCAAAAGAACTTACGAACCCACATGAACACACACAAGAAATACGGGTTTGTACAGTAA
- Protein Sequence
- MKLIKCGNETKVDVSETKCNVCSEDFTDIDDLITHLKCKHKLWFDKDVSLTLAKYRLADLKCLVCDKSFKMFCNLVRHMNQSHPDNCFQCDTCSQRFNKKRDLSNHVRTNHRKDYNCPKCSLSFSCFQNLLNHKTKEHLSKCNLCFQIFSSYKKRLSHMKEEHQLNDGGECGFCHKKFQTKHGFLDHATRCKVSIKDEESIVVVDDEDKNEELRVLRAGIAYIINMTAALPFKFLHSKFRCFYCPKYFTVCDDLRQHSITEHPVCETTFHAMKLRGRSEGVKIKVDTSSLYCQMCFEKFTDFIEAINHLEAEHKAVINKCVDMFRPFKLVHDKFRCASCDLEFRYFNLLLQHVNANHSGNQYICTFCDETPALLIDRKTSERRRKNLKTIFDNSTIIPFKWRGKHICFYCSTPFSNYIEFRKHTKSHGKCNISNYAMKNLKGNGLAINVDVSEIACKLCERQFKSLEVIVEHLINEHNLFYDKKIYSEVVEYRLIDLQCTQCDQQLDTFRHLVSHVNKHHPLNSFICHHCGRKFNKKRDITGHINNYHRLGGYVCKKCGEECKSRFDLRKHTARTHLMRCHVCDKQFTNLNKLLKHMKLEHSDDDNKTCRFCMKEFHSAVGLKMHFSKCKVKLISQDEIDITQHESTYPETSINSSRTHEQIVRIRENIQCVLNMSTAIPFRFRVTFSCFYCALKYDDYEVLKQHTQTEHPICDIKSKSMKKCKGKRTFVRVDIADLACKLCSAPMPDLEHFIDHAISVHDADYDKAVSIETCFEPYRLIKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNVICDYCGRGFRSNTNLKMHLQNTHTGSCECKICHAKFKNQSVLVRHMAKTHDVKTFKCANCSEMFESEYQRKTHLIKVHGIGHKCEYCGKMFTKHSFKDSHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKYKCELCGKAFLRQKNLRTHMNTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -