Tobe022906.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387921.1:17822237-17827373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.35 21 6.2 0.3 2 23 88 110 87 110 0.95 2 22 4.4e-05 0.0027 18.5 3.4 1 23 115 138 115 138 0.96 3 22 1.5 94 4.2 6.1 1 23 141 164 141 164 0.94 4 22 0.00058 0.036 15.0 0.8 1 23 170 193 170 193 0.95 5 22 0.0017 0.11 13.4 0.7 2 23 201 223 200 223 0.96 6 22 0.45 28 5.8 0.6 1 23 228 250 228 250 0.98 7 22 4.8e-08 2.9e-06 27.8 0.4 1 23 256 278 256 278 0.98 8 22 0.037 2.3 9.3 0.5 1 23 360 382 360 382 0.98 9 22 0.36 22 6.1 0.1 3 23 454 475 452 475 0.93 10 22 0.00065 0.04 14.8 0.2 3 23 483 504 482 504 0.97 11 22 0.0014 0.088 13.7 0.6 3 23 511 532 510 532 0.95 12 22 0.01 0.64 11.0 2.4 1 23 538 561 538 561 0.98 13 22 0.0011 0.065 14.1 2.2 2 23 568 590 567 590 0.95 14 22 0.041 2.5 9.1 1.3 1 23 596 618 596 618 0.93 15 22 0.0031 0.19 12.6 1.0 1 23 652 675 652 675 0.92 16 22 0.098 6 7.9 1.2 2 23 747 769 746 769 0.95 17 22 0.035 2.1 9.4 0.2 1 23 773 796 773 796 0.95 18 22 2.3e-05 0.0014 19.3 1.3 2 23 800 822 799 822 0.96 19 22 0.2 12 7.0 0.5 2 23 828 850 827 850 0.93 20 22 0.0006 0.037 14.9 0.7 2 23 858 880 857 880 0.94 21 22 0.21 13 6.9 0.0 3 20 888 905 886 908 0.94 22 22 0.003 0.19 12.7 2.2 5 22 917 934 906 937 0.86
Sequence Information
- Coding Sequence
- ATGCGAGACTGCGATGTCTTGAAAGAGCACACTCAGAAACACAACGCAGTAGACCTGGACAGCTTCTTGAAGAAGCACATCATAACCAAAGATGTGCCTGTCAAAATTGACGTGACCCATATTGCTTGCAACTACTGCCCTGACGTTCCTATAAGCACAATTGAGGAAATGGTGTCCCATGTCGTCAACGATCACGGCGAAGAGTACGATACGACAGTGGAACTATGCTTCTTTCCTTTCGTGCTGAATAAAGATCTCATGCAGTGCGTGTTGTGTAATTCCGACTATGACAACTTTACTTCTCTGATCGCTCATATGTACAAGCAGCACGTCACACATTCCTTCATGTGCCAGATATGCGGACTCAGCTTCAAAGATCAGACTCGTCTCAAGCGACACATAAGCAAATGCCACGTCGGTCATCGTTGCACTTTCTGCGATAAAATCTTCGACGCGTTCCACAAGTTGGACAAGCATAAAGAGCGATTCCATGGACAGGTCAAGACATACGAATGCAACTTGTGTAGTGGCAAGTTCAAGAACAACTACCAGCTTAGAGTACATCTGGGGAAGGAGCATAACGTTGAAAAGTACAAGATAAAATGCGAGAACTGCGATAAGATTTGCACAACTAAAGGGGCTATGGTTCTGCACATACAAAGCATGCACTCCGAAATTAAATATCAGTGCGATTTGTGCGAGTATACGACTGGCATAAAATGGCTGGTAAAGCTCCATAAGCGCAAGCATTTTGCCGTAAAGGAATACTCCTGTAGCATTTGTGATAAAGCGTTTGGGAGAGCCAGTAATTTACGGACGCATATGAAGGTTCATGCAGGAGAACCTAGAGGTGGCCAGAAAGCGAAACTAGTGATTAAACCTACCCGACCTGCGCCTGTTCCGGTCCCGATAGCCAGCACCAGGCGATTGGCCAGAGACCTGGCGCCTTCAGCCAGCGTCCTCGCGGCAAAACCCAAAGGGTTATCCTCCCGTGATAAACGAAGCATCATGATTAAAAACGTCTTAGAGGTTTTACTAAAAACAACCGTAATGCCATTCCGCTGGCTCAAAAGCTCATACCGCTGCTTCTATTGCTACGATATATTCCAAGAAGCATCGGAGCTGAAGGCGCATCAGACCGTTCACACCGATGACACTATCAAGGAGAAGGCTATGAAAAACTACTGGGAACCTGTAGTTTACGTCGATATTTCCAATTTGAAATGCAACCTCTGTTCCGAGGAAGAAACTGACCTGTACGATATGGTAAACCATTTGATAGCCAAGCACAACGTGGTGTACAATAAAGATGTAGGAATCTGCATGGTTGCGTTTAAACTGAACAATTTTGACGTGAGCTGTCTAGCTTGCGGCGCTAGCTTTTACACTTTCGGGCCATTACTGAACCACACTAACAAAGATCACAAGGGTACATCGGCTATTCTTTGCGATATATGCGGACAGAATTATAAAGACCAGAATCTTTTGCGTTTGCACGTGAAATCAGTCCACGACAACAGCGGAATGCTCTGCCCGGAATGTGGCGACAAGTTCGAAACGCGATCCAAGCTGAAAACGCACCAAATAAACAACCACGGACTCGAAAGGAAGTTCAAATGTTTAGTCTGCGATCAAATGTTCGGCAGCCATTACAAAAGATCGCGGCACATGGCGACTGATCACAAAAACAGGCAAGAGATCAAATGCCTGCATTGTCCCAAGACGTTTGTCTTTAGAAGTATGATGATGACGCATTTACGTGACACTCACCTGAAAGTCCGAAACCATATCTGTGGTGTGTGCGGGTGGAAAGCATTTAACAGCAACCGGCTGAAGAATCACATGTATAAGCATAGCGAGGTGGCCTTGAAGAACGAACAGCAACTAGCAGGGGTGCTTATAAGTATCATACAGCACTCCACCATGTTACCCTTCCGATGGCATAAGGGAAGTTTCATGTGCTTTTACTGCCCCTCGACTTTCAACACCTCCACCGCTTTAAAAAACCACAATAAAGGCGGTCACGGTGAAATTAATATCACAGATATCGTGACTCGAGTCATGTACAACGATCGCAGAATCAAACTAGATGTTGCAACAGCGAGGTGTAACCAATGCAATATACGAATCTTGGACATATCAGATTACATCGAACATATTTGGGCGAAACATGATGCAGTTTTCGATTCAGATGTAGCCCAAAACTTCATCTCCTACCGTCTTTCCGATGGTGAGATGAGCTGTGTCGAATGCGGGCTACACTTCCAATACTTCAGACAGTTACTCATTCACACCAATAAAATCCATATGAACAAGCATATGTGCGAGATTTGCGGGCAAGGCTTAGCCGGAAAGGTGAATGTTTACAACCATATGAAGCAAATACACGGTATCCAAAAATGCAAGTACTGCGATGAGAAGTTCCGCACGCAATACGCGTTGTTCCAACACGTAACGACGGTACACAACACTGACGGGCTGAAGTGCAGCGTTTGTGGAGAGCTACAGAAGAATCGATACAAAATGAAGCGACACATGGCTTTGGTGCACGATTGCAAGAATTTGCAGATTGTCTGCGAATACTGTTCCAAAGTTTTTACGAGGAACAACAAGTACGTTCAGCATAAAGAACGCGTGCATTTCAAGCAGAAGAATATAGCGTGTGATGTTTGTGGGTATGAGACGTATGACGCGCCCGCGTTGAAACTTCACATGGTGTGCCATAACGAAACACTGCCGTACTCGTGTGTGTGCGGTAAAAGGTTTAAGAGGTCTAAAAATCTGCTTTCACATCAAGTTAAATGTCCACATAACGTTGTGGCTGAAAGCACGGTTGCTCCCGAATGTGGAGAAAGCACCGAACAGTGA
- Protein Sequence
- MRDCDVLKEHTQKHNAVDLDSFLKKHIITKDVPVKIDVTHIACNYCPDVPISTIEEMVSHVVNDHGEEYDTTVELCFFPFVLNKDLMQCVLCNSDYDNFTSLIAHMYKQHVTHSFMCQICGLSFKDQTRLKRHISKCHVGHRCTFCDKIFDAFHKLDKHKERFHGQVKTYECNLCSGKFKNNYQLRVHLGKEHNVEKYKIKCENCDKICTTKGAMVLHIQSMHSEIKYQCDLCEYTTGIKWLVKLHKRKHFAVKEYSCSICDKAFGRASNLRTHMKVHAGEPRGGQKAKLVIKPTRPAPVPVPIASTRRLARDLAPSASVLAAKPKGLSSRDKRSIMIKNVLEVLLKTTVMPFRWLKSSYRCFYCYDIFQEASELKAHQTVHTDDTIKEKAMKNYWEPVVYVDISNLKCNLCSEEETDLYDMVNHLIAKHNVVYNKDVGICMVAFKLNNFDVSCLACGASFYTFGPLLNHTNKDHKGTSAILCDICGQNYKDQNLLRLHVKSVHDNSGMLCPECGDKFETRSKLKTHQINNHGLERKFKCLVCDQMFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGWKAFNSNRLKNHMYKHSEVALKNEQQLAGVLISIIQHSTMLPFRWHKGSFMCFYCPSTFNTSTALKNHNKGGHGEINITDIVTRVMYNDRRIKLDVATARCNQCNIRILDISDYIEHIWAKHDAVFDSDVAQNFISYRLSDGEMSCVECGLHFQYFRQLLIHTNKIHMNKHMCEICGQGLAGKVNVYNHMKQIHGIQKCKYCDEKFRTQYALFQHVTTVHNTDGLKCSVCGELQKNRYKMKRHMALVHDCKNLQIVCEYCSKVFTRNNKYVQHKERVHFKQKNIACDVCGYETYDAPALKLHMVCHNETLPYSCVCGKRFKRSKNLLSHQVKCPHNVVAESTVAPECGESTEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -