Tobe011258.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- ZFX
- Assembly
- GCA_947578465.1
- Location
- OX387915.1:25973052-25975462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2 1.4e+02 3.7 1.8 2 23 4 25 3 25 0.90 2 18 4.1e-07 2.5e-05 24.9 1.6 2 23 110 131 110 131 0.97 3 18 0.00039 0.024 15.5 0.1 5 23 141 160 139 160 0.94 4 18 0.037 2.3 9.3 1.9 1 23 166 188 166 188 0.94 5 18 0.0008 0.049 14.5 0.1 1 23 194 216 194 216 0.98 6 18 0.0014 0.083 13.8 0.4 1 17 221 237 221 238 0.94 7 18 0.0049 0.3 12.0 0.8 1 23 344 366 344 366 0.97 8 18 8e-05 0.0049 17.7 0.4 1 23 372 395 372 395 0.91 9 18 0.00014 0.0086 16.9 1.3 3 23 403 423 402 423 0.98 10 18 4.5e-08 2.8e-06 27.9 1.2 1 23 429 451 429 451 0.99 11 18 0.0019 0.12 13.3 0.0 1 23 457 479 457 479 0.97 12 18 0.025 1.5 9.8 0.1 6 20 489 503 488 506 0.94 13 18 0.81 50 5.1 0.2 1 20 512 531 512 533 0.91 14 18 4.6e-05 0.0028 18.4 0.0 2 23 557 579 556 579 0.93 15 18 0.00012 0.0075 17.1 2.1 3 23 587 608 586 608 0.95 16 18 0.0089 0.54 11.2 0.1 3 23 619 639 618 639 0.98 17 18 0.0075 0.46 11.5 0.0 6 23 648 665 647 665 0.96 18 18 0.0065 0.4 11.7 0.2 6 23 675 692 674 692 0.99
Sequence Information
- Coding Sequence
- ATGGAGGTTGTCTGTCACAAATGTGACTTGAAGACTTCTAACGAACTGTTCTATCAGCACTTGAGCTCACAGCATGAGAGCGTCACCGACAAAGATGATGTAGAACAATTTGTGAGAGACCATGTGACATTCGAAGAGGCGCTCGATTCTGATGTAGAATGTAACACTCCATCAGAATCACTGAATGACCCTCCACGATGCAAGAGTTGCGACAATATTGCAACAGATTCAGACGCATCGAGCACGCAGGTCGCCCATAACCTAACAATGTTCGATGTCAGTTCATCCCAGGCGAAAGATGACACCAACCAGAAACGCATCCCGGCAGTCTGTCCCGACTGCAACCGCACCTTCTCCAACAAGTACAACATGTTCAATCACATGAAGAGTCACGGAAGATCGAGCGAGAAGTTCCCCTGCGAATGTGGGAGGAGTTACACCACTCGCGGGAACTTGGCAGCGCATCGCCGCGCGGCGCACTCAGGTCACAAGCCGCACGCCTGCGCCCACTGCGGGGAGCGGTTCCCGACGCGCTCCGGCCGCGACCTGCACTCTCGCTCGCACTCGCCCGCAAGGCTATACGCGTGCTCGCTCTGCGCGCGCGCCTTCCGCGCCGCCGGCTCGCTCGCGCGCCACCGCCAGACGCACGCCCCGCCGGCGCACGAGTGCCGGCTCTGCGGGAGGAGGTTCACGAGGAAGGCGCATCTCAGGTCCGCGTCGGCGGAGCGCTCGCCGGATCGCGACTCGGAGGAGAGCGCGCCGCTCGCCGCGCTCCTCGGCGCCGACCCCCTGGCGGCGTTGAGGCGCGCACTGCAGCTGCTGCGCGACCACCACGCCGCGGACCACGCCCGCGCGACCAGCGACTCCGGCGAGGAGGACGCGGAGGACGCGGCGCCGGCGCCGGAGCGCGGCGACGATCCCGACCGGTTCGACGACCTGACGCGTGGCAACATGCGCGGCAACCGCTTCGACGAGGAGACGCGGCGTGCGCTGGAGGCGGCGCGCGTGCCGGGCGCCGCGCCCCGCGCCTACGCGTGCGCCGAGTGCGGGCGCCGGCTCGGCTCGGCGCACGCCTTCGTGCACCACCGCCGCATCCACTCGGGCGAGCGGCCGCACGTGTGCCACGTCTGCGGGAAGAGCTTCCGCGCGCCGCAGGGGCTCGCGCGCCACGTCGCCGAGACGCACGAGCGCCGCCGCCGTCGCGCCTGCCGCCTGTGCCGCACCACCTTCGCCAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCCCCGAGTGCGGGAAGCGGTTCGCGCAGAGCGGCTCGCTGCACGCGCACCGGCGCACGCACGCGCCGCGCCGCGCCTTCCCGTGCGCGCTGTGCGGCGCCGCCTTCCGCCTGCGCGCCGGGCTCGCGCGCCACCTCGCGCGGCACTCGGGCGCGCGCCCGCACGTGTGCGCGTGCGGGCGCGCCTTCGCCACGCGGCACGAGCTGCGCGCGCACCTGCCGCTGCACGGGGACGCCGCGCCGCACGCCTGCGCGCTCTGCCCGCACGCCTACAAGCTGCGCCGCGCGCTCAGGGACCACGTGGCCCGCCTCGACGTAGCCGCGCCCGCTGCCGCCGCGCCCGCCGGCGACCCCCCGCGGCGAGGGCGGAAGCGGCTCGAGTGCGGCTCGTGCGGTCGCGTGTTCACGGACGCGGCGAATCTGTCGCGTCACGGGCGCGAGGTGCACGGGGCGCGGCGCGAGGCGGCGTGCGCGCTCTGCGGGCGGCGGTTCTCGCGCGCGGAGCACCTGCGCTCGCACGAGCGGCACGCGCACGGCTCGCGGGGGGGCGCGGCGGCGCTGCTGTGCGAGCGATGCGGCGCCCGCAGCGCGTCGGCGGCGGCGTTGCGCGCGCACCGGCGCTCGCACGCGGCGCCGCGGCTGGCGTGCGCGTGCGGCGCGGTGTTCCGGCGCGCGTCGGAGCTGCGCGCGCACGGCAGCGTGCACTCGGGCGCGCGCCCGCACGTGTGCGCGTGCGGCCGCGCCTTCCGCCTGCGCGCCCAGCTCACGCAGCACGCGCGCCGACACAAACCCGTAGAGCCAGCCCCGCGACCGCACGACCTAGCCGACCTCTCTCTAGCTGTTCCCTAG
- Protein Sequence
- MEVVCHKCDLKTSNELFYQHLSSQHESVTDKDDVEQFVRDHVTFEEALDSDVECNTPSESLNDPPRCKSCDNIATDSDASSTQVAHNLTMFDVSSSQAKDDTNQKRIPAVCPDCNRTFSNKYNMFNHMKSHGRSSEKFPCECGRSYTTRGNLAAHRRAAHSGHKPHACAHCGERFPTRSGRDLHSRSHSPARLYACSLCARAFRAAGSLARHRQTHAPPAHECRLCGRRFTRKAHLRSASAERSPDRDSEESAPLAALLGADPLAALRRALQLLRDHHAADHARATSDSGEEDAEDAAPAPERGDDPDRFDDLTRGNMRGNRFDEETRRALEAARVPGAAPRAYACAECGRRLGSAHAFVHHRRIHSGERPHVCHVCGKSFRAPQGLARHVAETHERRRRRACRLCRTTFANEQNLRQHLRTHTGERPFQCPECGKRFAQSGSLHAHRRTHAPRRAFPCALCGAAFRLRAGLARHLARHSGARPHVCACGRAFATRHELRAHLPLHGDAAPHACALCPHAYKLRRALRDHVARLDVAAPAAAAPAGDPPRRGRKRLECGSCGRVFTDAANLSRHGREVHGARREAACALCGRRFSRAEHLRSHERHAHGSRGGAAALLCERCGARSASAAALRAHRRSHAAPRLACACGAVFRRASELRAHGSVHSGARPHVCACGRAFRLRAQLTQHARRHKPVEPAPRPHDLADLSLAVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -