Tobe004355.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- Znf296
- Assembly
- GCA_947578465.1
- Location
- OX387918.1:12616382-12621074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.6e-06 0.00022 21.9 0.5 1 23 337 359 337 359 0.98 2 15 0.00012 0.0071 17.2 1.6 2 23 364 385 363 385 0.96 3 15 8.8e-06 0.00054 20.7 3.2 1 23 391 413 391 413 0.97 4 15 0.0011 0.069 14.0 0.5 1 23 418 442 418 442 0.92 5 15 2.5e-07 1.6e-05 25.5 0.9 1 23 448 470 448 470 0.98 6 15 0.00028 0.017 16.0 0.0 1 23 476 498 476 498 0.97 7 15 0.00029 0.018 15.9 1.3 1 23 504 526 504 526 0.97 8 15 0.03 1.9 9.5 0.0 2 23 533 556 532 556 0.91 9 15 5.5e-05 0.0034 18.2 0.3 1 23 562 586 562 586 0.95 10 15 8.5e-05 0.0052 17.6 2.6 2 23 613 634 613 634 0.97 11 15 0.0002 0.012 16.4 0.7 1 23 640 662 640 662 0.98 12 15 2.4e-05 0.0015 19.3 0.2 2 23 669 690 669 690 0.97 13 15 1.6e-06 0.0001 23.0 1.0 1 23 695 718 695 718 0.97 14 15 0.00011 0.0068 17.2 0.9 1 23 724 746 724 746 0.97 15 15 0.013 0.81 10.7 0.8 1 21 752 772 752 773 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGCGCCGGCGAGGCTGTGTGCCGCGTGTGCCTCGGCGGCGGCGTCAGGATGGACACGGTGGAAGATGACCAGCTCCTGGAACTGTACGAGAAACTCACCAGTGCCAAGTTGAACGCGCGCGATGGCCGGCCCGGCACTCTGTGCTTCGTGTGCTCGGCGCTGCTGCGGCGCTGCCGGCGCTTCGCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTACATGTACATACCTACTGCTCTGCTGCGGCGCTGCCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTACATGTACATACCTACTGCTCTGCTGCGGCGCTGCCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTACATGTACATACCTACTGCTCTGCTGCGGCGCTGCCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTACATGTACATACCTACTGCTCTGCTGCGGCGCTGCCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTACATGTACATACCTACTGCTCTGCTGCGGCGCTGCCGGACATGGCGCGCCGAGCCGAGCGCTCGCTGCACAGCCTGCTCACCACTAACCGCAAGGTGACGGCGGAGACGATATCGTCGCTTCAGCTGGCGGCGCCGCCCGCGCTCACGCTCACGGCGCTCGACGCCGTCTCGCTGGAGCCCGCCGTGCCCTTGAGCATGAGCCACACCGTCCTCGCCCCGCCCTTCTCCGAGGTCGCCGTCAAGCAGGAGGCCGCGCACGGGGAGCTCTGCACCAAGACCGAACGGAACTCGCTCAACGACACAGACGACGACTTCCATCGAGAGCCCATCAAGGAGGAAGCGCTCGCCAACACCGACGACCCGGACCTCTACTACAACTGCGACGACTGCCAGCTCAAGTTCACATCCAAGCGTCAACTGGTCGCGCACATCCGGATCCACAACTACGACACGTACTGCAACAAGTGCAACAAGCTGTTCTCCAACACGAGCAGCCTGAAGGGGCACATGAGCATCCACACGGGCGAGCGGCCCTTCGCGTGCCACATCTGCAGCCGCACCTTCCGCAAGAAGCCCTACCTCACCAGCCACATCCGCATGCACGCCGAGAAGCCCTTCTTCTGCAGCTTCGACTCATGCAACGCGGCCTTCCCGCAGGCCGAGCACCTCGCCAAGCACATGCAGGTGCACACGCGCGAGAACCCCTTCGTGTGCAACCGCTGCGACAAGACGTTCGCGTACAAGAGCGCGCTCACGCGGCACGTGCGCATCCACAGCGGGCTCAAGCCCTTCGCGTGCGCGCGCTGCGACGCCGCCTTCGCCGTGCAGAGCAGCCTCACCAAGCACGCGCGCGTGCACTCCGCCGCCAAGCCGTACGCGTGCGCGCGCTGCGCCGCCGCCTTCAACCACGCCGGGAACCTCAAGCGGCACATGCACACGCACGCGGAGGACAAGCCGCACGCGTGCCCCGCCGCCGCCTGCGGCAAGCGCTTCCGCGAGGCGGCCGCGCTCGACGAGCACGCGCGCCTGCACACCGGCGAGAAGCCGCACGCGTGCCCCGCCGCCGGCTGCGGCATGCGCTTCACCTTCAGCAGCACGCTCACCAAGCACGTGGCCACGCACGAGGCCGCGCCGCCCGACGCCGCGCCGCCGCCGCCGGGCGCCTCCCCCGGCGCCGGCGCCAGGGTGCGCGTGCGGCCCTCGTGCCAGGTGTGCAAGAAGCAGCTGACGTCGAACTCGCACCTGATCATCCACATGCGGTCGCACACGGGCGAGCGGCCGTACCCGTGCTCGGTGTGCAGCCAGACGTTCCGCACCAAGACCATCCTGAAGGGGCACATGCGCGTGCACACGGGCGAGAAGGTGGCGTCGTGCGAGATCTGCGGCATGGCCTTCACGCAGACCGGCAGCCTCGGCAAGCACATGCGCCTGCACACGGGCGAGCTGTACGCCTGCCACCTGTGCGGCAAGGGCTACAAGCAGAGCGGCCAGCTCACGGCGCACATCCGCAACTTCCACGAGGGCATCAAGCGCTTCTCCTGCGACATCTGCAGCGCGCGCTTCACCGCAAGAGGACACCTGCGGAACCATATGAACGCGCACGCCGGCATCAAGCCCTACTCCTGTCTCAAGTGCAGCAACCGATTCGCGACCAGGACCGTGCTCAGGCGACACATCAAGAACTCGTGCAAATGA
- Protein Sequence
- MSSAGEAVCRVCLGGGVRMDTVEDDQLLELYEKLTSAKLNARDGRPGTLCFVCSALLRRCRRFADMARRAERSLHSLLTTNRKVHVHTYCSAAALPDMARRAERSLHSLLTTNRKVHVHTYCSAAALPDMARRAERSLHSLLTTNRKVHVHTYCSAAALPDMARRAERSLHSLLTTNRKVHVHTYCSAAALPDMARRAERSLHSLLTTNRKVHVHTYCSAAALPDMARRAERSLHSLLTTNRKVTAETISSLQLAAPPALTLTALDAVSLEPAVPLSMSHTVLAPPFSEVAVKQEAAHGELCTKTERNSLNDTDDDFHREPIKEEALANTDDPDLYYNCDDCQLKFTSKRQLVAHIRIHNYDTYCNKCNKLFSNTSSLKGHMSIHTGERPFACHICSRTFRKKPYLTSHIRMHAEKPFFCSFDSCNAAFPQAEHLAKHMQVHTRENPFVCNRCDKTFAYKSALTRHVRIHSGLKPFACARCDAAFAVQSSLTKHARVHSAAKPYACARCAAAFNHAGNLKRHMHTHAEDKPHACPAAACGKRFREAAALDEHARLHTGEKPHACPAAGCGMRFTFSSTLTKHVATHEAAPPDAAPPPPGASPGAGARVRVRPSCQVCKKQLTSNSHLIIHMRSHTGERPYPCSVCSQTFRTKTILKGHMRVHTGEKVASCEICGMAFTQTGSLGKHMRLHTGELYACHLCGKGYKQSGQLTAHIRNFHEGIKRFSCDICSARFTARGHLRNHMNAHAGIKPYSCLKCSNRFATRTVLRRHIKNSCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -