Tobe010520.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- -
- Assembly
- GCA_947578465.1
- Location
- OX387915.1:13089204-13098866[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 8.9e-09 35.3 0.0 4 39 172 208 169 212 0.90 2 4 2.2e-12 2.5e-09 37.1 0.4 2 39 224 261 223 264 0.93 3 4 7.6e-16 8.7e-13 48.2 0.1 2 45 279 323 278 323 0.96 4 4 2.7e-18 3.1e-15 56.0 0.0 2 44 331 374 330 375 0.95
Sequence Information
- Coding Sequence
- ATGGCTGGCTTTGGAACTGCTGCCGTAAAATGTGAGCCGCCATCTGATGAAGAAGATGATAGTCCTCAGTTCCCTGATATATTCCATAACACGAACTCATCAGGATCAGGATTCCTTGCACTTACTTCTCTGAAAGTAGAAGCAGGTTACCACAACGATGAGGGTATGCCAACGTTGCTTCAGCATTTACAGAGTTCAGAAGCGCTGGAAGAGCTAGCTCCACCGGCACCAGCCGCGCCCACAGCCACCCCGGTCTGCGTTAAACAAGAGCGTGTGGAGACGCCCGCCCTCAATCTGGAGACCTTGGAGCCTGCTCCACATGCGGGTTCGTTGTTGGAGAGACGCATGGCGATATTGAGGTCATCTGAAGTACCCGACTCTGCTAACTTCATGGCGCTGCCCTTGACGGCCAAGGAAGAACACTCCTCCGAAGGTGAACAGCAACCGTTGAGTGCTGATGAGCTGAGCGATTCATGTGGCCTGCGCGCGGGTCCAAAGGCGTGGTCGCAGCAGGACATGGATAACGCGCTCGACGCACTTCGGAACCACAATATGAGTTTGACTAAAGCATCATCGATGTACGGCATTCCGTCAACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAAAAGGAAGGCGCCGCCAAGTCATGGAGCGAAGCCGACCTGCGCGCCGCACTGCACGCACTCCGTGCTGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATCCCCAGCAGTACGCTGTACAAGATAGCTCGTCGCGAGGGCATCCGGCTGGCTGCGCCGTTCAACGCGGCGCCGGTGTCATGGCGGCGCGGGGACCTACAACGAGCGCTGGCGGCCATCCGCGCCGGCCGCGCCTCCGTGCAGAGAGCGGCCTCACAGTACGGGATACCTACTGGGACACTTTACGGACGCTGCAAACGAGAGGGCATAGAGTTGTCTCGATCAAATCCCACGCCGTGGTCTGAAGGCGCCATGGGAGAGGCACTAGAAGCCGTCAGGGTTGGCCAGATGTCGATAAACCAGGCAGCTATTCACTACAACTTACCGTATTCTTCACTTTACGGTAGATTCAAGCGGTGCAAGTACCAGGTTCAGCCGATTCCGCAGCAAGAAACACAAATCCCTCAAGAAATGGTCCCCAGCCAAGAGCACTACTACCATCCAATGGGCATGTACCCTGAGCACGAGTACTCCCAGCCGCCGCCTCACGCTCACGAGCTCGTCCAGCACTCACACAACCTTCAGGAGCAGTATCCTCAGCCTATGTACTACCAGAGCTTTAGCAGCATCGCGACCAGCTGA
- Protein Sequence
- MAGFGTAAVKCEPPSDEEDDSPQFPDIFHNTNSSGSGFLALTSLKVEAGYHNDEGMPTLLQHLQSSEALEELAPPAPAAPTATPVCVKQERVETPALNLETLEPAPHAGSLLERRMAILRSSEVPDSANFMALPLTAKEEHSSEGEQQPLSADELSDSCGLRAGPKAWSQQDMDNALDALRNHNMSLTKASSMYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQPIPQQETQIPQEMVPSQEHYYHPMGMYPEHEYSQPPPHAHELVQHSHNLQEQYPQPMYYQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -