Tele048694.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- -
- Assembly
- GCA_026168455.1
- Location
- CM047427.1:70297400-70306658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.051 19 7.9 0.9 1 21 79 99 79 99 0.97 2 13 1.5e-05 0.0056 19.0 0.3 2 23 109 131 108 131 0.95 3 13 0.00059 0.22 14.0 6.9 1 21 139 159 139 160 0.97 4 13 0.0031 1.2 11.7 0.3 1 23 168 191 168 191 0.93 5 13 9.9e-05 0.037 16.4 1.1 1 20 196 215 196 216 0.96 6 13 0.00013 0.047 16.1 0.7 2 23 221 243 220 243 0.96 7 13 0.0025 0.94 12.0 0.0 2 21 262 281 261 282 0.94 8 13 0.34 1.3e+02 5.3 3.6 1 23 289 312 289 312 0.97 9 13 0.089 33 7.1 0.8 2 14 429 441 428 442 0.88 10 13 0.011 4 10.0 1.5 1 23 489 512 489 512 0.95 11 13 0.63 2.4e+02 4.5 0.9 2 15 549 562 548 569 0.78 12 13 0.011 4 10.0 1.5 1 23 609 632 609 632 0.95 13 13 0.0011 0.39 13.2 0.8 1 23 675 698 675 698 0.95
Sequence Information
- Coding Sequence
- ATGTTACAGATACTTTTTTTCGATAATGTTACAGGTGGTTTGACCGCTATGACTGAGATATGTTTCATTGATGAAGAAGCCAGTGATACCTATAACACTGAATTGGATGATAGTTCTAAATTACCAGATTCTGAATTCGAGCTGACGTTTTGCGGGAATTGCAATAAGACATCGAGATTCGACTTTTTATCGAAGGCACCGAAAATCTGTCCCGAATGTTCCGGTGTATTGAAATACCAGTGTCTACGATGCAGCAAGCAATACAAAGGTATTAAATCGTTGCGAATGCACTTGCGTTGCGAGTGTGACAAGCCAGCAAGAATTCAGTGTGAAAAATGTCCGTATCGTACAACTCGACAAGGTAACTTAAACATCCATATGAAAGCGATGCATTCGAGCGACGAACGCAAACGACACAAGTGTCCGAAATGTGGACACCGTTACAAATTCCGATCGCACCTCTTTTACCACATGCGATTTTGCGGTGTAGTCGACAAAAAATACAAATGTGAATATTGTAACTATAAATCGCTACGTCCCTACTCGTTGCAATCGCATATAATTGCAGCTCACGGAAATACGTTTTACGAATGCATGTCGTGTGGGAAACGTTACAAACACTTGTCATCGCTCAGGAAACATTTGGTAGGATGCGGCATAGAGTGCGATCATTGCGGATATAGAGTTAATCAGAAACGGGAGTTGATAATACATCTGAAAAAGGAGCATCGTTTCGTATTCGATAATCAAATTACGAAATCGAGCGACGATAAAGTCCGCGGTAAATGCGAAATGTGTGGTAAAGCGTACAAGGCTGTTTACGCTTTGATGAAGCATCAAGCAATGTGCAAAGGATTAAGGGAGTTCGAATGTGCTCATTGCGAATTCTACACTACGAGTCGGTTGACGCTCAAAGATCACTTTCGTTCGACTCATATGTACGACAATATCATCCCTGGACCTAATATAATAGAAGTAATGCCTTTTTTAAAAATTCGTGATATTCGACCACTGTATTCATTTGACGATCCCGTGGATTCTGATGCGGATCAACGAGATGGTACATATATTAAGAATAACGAATCAAGTTGTACTGAATCAGATAATGATACAGAAGATTACAGTCCCTCGGACGATGATTACGCAGATGATACATTTAAATATGATTGGAAATGTAAGACTAGATTGAGAGCAAGGCGTATAAAGACGGAAAATGTTGATCAAGAATCGCAATTAAATATCCGCGGCATGAATTTCTCAGGTGTAGACAATCTGGTACGTTTGTATTGTAAAAAGTGTGACAAGTCTTACCCTCGAAGTAAGGAGCCTCAAAAACGTGCTACATCGTGTAGCATTTGCAGAAGTATTTTGTTGCATCAATGTGGACGCTGCCGCGATCGCGTTTATACTACTTACTGTTCAGCTATCCGCCATGTCCAGGGCGAATGTGTAAATCCACAAACACATGCATGTCGTTACTGTGATTACGAAACTCCTCGCAACTACCGATTGGTAACGCACATGGCGCGTAAACACCCACATTTGATTCCACGAATTCCGAGGAAAACTTCGAAACAGAAAGTTGCCACTTTGTCACGACGCAAAAAATGCCCGAAATGTGGTGTAGACAATCTGGTACGTTTGTATTGTAAAAATTGTGACAAGTCTTACCCACTAAGTAAGGAGCCTCGAAAGCATGCTACATCGTGTAGCATTTGCAGAAGTATCTTGTTGCATCAATGTGGACGCTGCCGTGATCGCGTTTATACTTATTACTGTTCAGTTATCCGCCATGTCCAGGGTGAATGTGTAAATCCACAAACACATGCATGTCGTTACTGTGATTACGAAACTCCTCGCAACTACCGATTGGTAACGCACATGGCGCGTAAACACCCACATTTGATTCCACGAATTCCGAGGAAAACTTCGAAACAGAAAGTTGCCACTTTGTCACGACGCAAAAAATGCCCGAAATGTGCTATCCGCCATGTCCAGGGCGAATGTGTAAATCCACAAACACATGCATGTCCTTACTGTGATTACGAAACTCCTCGCAACTACCGATTGGTAACGCACATGGCGCGTAAACACCCACATTTGATTCCACGAATTCCGAGGAAATCTTCGAAACAGTAA
- Protein Sequence
- MLQILFFDNVTGGLTAMTEICFIDEEASDTYNTELDDSSKLPDSEFELTFCGNCNKTSRFDFLSKAPKICPECSGVLKYQCLRCSKQYKGIKSLRMHLRCECDKPARIQCEKCPYRTTRQGNLNIHMKAMHSSDERKRHKCPKCGHRYKFRSHLFYHMRFCGVVDKKYKCEYCNYKSLRPYSLQSHIIAAHGNTFYECMSCGKRYKHLSSLRKHLVGCGIECDHCGYRVNQKRELIIHLKKEHRFVFDNQITKSSDDKVRGKCEMCGKAYKAVYALMKHQAMCKGLREFECAHCEFYTTSRLTLKDHFRSTHMYDNIIPGPNIIEVMPFLKIRDIRPLYSFDDPVDSDADQRDGTYIKNNESSCTESDNDTEDYSPSDDDYADDTFKYDWKCKTRLRARRIKTENVDQESQLNIRGMNFSGVDNLVRLYCKKCDKSYPRSKEPQKRATSCSICRSILLHQCGRCRDRVYTTYCSAIRHVQGECVNPQTHACRYCDYETPRNYRLVTHMARKHPHLIPRIPRKTSKQKVATLSRRKKCPKCGVDNLVRLYCKNCDKSYPLSKEPRKHATSCSICRSILLHQCGRCRDRVYTYYCSVIRHVQGECVNPQTHACRYCDYETPRNYRLVTHMARKHPHLIPRIPRKTSKQKVATLSRRKKCPKCAIRHVQGECVNPQTHACPYCDYETPRNYRLVTHMARKHPHLIPRIPRKSSKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -