Tele048683.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- -
- Assembly
- GCA_026168455.1
- Location
- CM047427.1:70156146-70180267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.86 3.2e+02 4.0 0.4 1 12 36 47 36 51 0.87 2 14 0.00093 0.35 13.4 0.4 1 21 162 182 162 183 0.95 3 14 0.58 2.2e+02 4.6 0.2 1 17 191 207 191 208 0.87 4 14 0.00017 0.063 15.7 0.5 2 21 238 257 238 258 0.94 5 14 0.17 62 6.3 1.0 1 21 288 308 288 309 0.94 6 14 0.0038 1.4 11.5 2.6 1 23 317 340 317 340 0.95 7 14 0.00092 0.34 13.4 0.4 1 21 362 382 362 383 0.95 8 14 0.0034 1.3 11.6 4.8 1 23 391 414 391 414 0.95 9 14 0.28 1.1e+02 5.6 1.5 1 17 838 854 838 855 0.92 10 14 1.5 5.5e+02 3.3 1.4 1 21 870 890 870 891 0.91 11 14 0.36 1.3e+02 5.2 0.2 1 23 906 929 906 929 0.95 12 14 9.7e-05 0.036 16.5 0.6 1 22 937 958 937 958 0.95 13 14 0.0053 2 11.0 7.8 2 23 966 988 965 988 0.96 14 14 0.0018 0.65 12.5 1.7 1 21 999 1019 999 1020 0.94
Sequence Information
- Coding Sequence
- ATGATGAGCGTAGATGAAAATACGACACAACAACGTCGTCGGCGTCGAGGTCGACCATCCACGATGTGTGAAGCTGCAACTTCCAATGAAAACGAAGAACATTCgttccaatgtcctcaatgcccaagtcgatttacgtatgagcgagAAGTTGAACCAGTTATTTTTATCAACTTGGATGACTTACCATATCCTGGAGTAGAACAAAAAATTCTTGTTCTAAGCTATAATCAATATCTTCATGATTTGAATCTCTTACAATACATGCGTGTTAATAATTACGGTACAAATGTCCATTCGAGTATTGAATCAAATATTAATCCTGCAGTGTGCGATCCTTTAACTTCAGGACATTATTTGAAAGAAAATACGTTATTACCCTTTGTACAGTTCAACTATCCTAATCAGATAACACAAAATTATGACAGCACGACCACGAATGCATCCTTGACTTCCAGATCAAAATTACTAATTAATGAGAAATTTCCTTGTCCGAATTGCAGTAGCGTCTACAATCGCTACGACAATTTGAAGCAACATTTAAAGTATGCTTGCAATCAGGAACCACGTTTTGCATGTCCATATTGTAAATACACAGCGAAACGTTATGCGGAACTATTCGCGCAGAACTACGATCCACTAATCACGCAACGACCCAAAAATACGAACCATCAGAATGCGCATCTAGCCTACAAATCATCATTAACTAATGTTTGTTATCAGTGTGGTAAATCTTACGCCCATGCAACAACGTTGAAACGTCACTTAAATTACGAATGCAACAAACCACCACGATTTTGCTGTTCTTACTGTCCTCAACATCATCCTCAATGGACACCAAAACCGCCAAAACCTCGTAATTATACTTGCATCCAATGTGGTAATTCTTACGTTCACGATTTCACCCTCCGAAGACACATAAAGTACGAGTGTCGCAAACCTGCTCGGTACTGCTGTTCTTATTGTCCACGGCGCAGTAAGTACAAGGCTAATGTGCAACAGCACATTTTGCAACTACATCCTGGCAAAGAAGTTAAGATCATTGTTGAAGATGTTCCTGAAAAGCAGCGAAGACCTCGAAATTATATCTGCGTTCAATGTGGTAATGCTTATGTTCACAATTACACCTTACGGAGGCATATAAAGTACGAATGTCGCAAACCTGCTCGATATTGCTGCTTTTATTGTCCCCAACGTAGCAAACAGAAGGCTAATCTGCAACAGCATATTTTGCATTTGCATTCGGGTAAGCGGAAGGGTACTCCAATGACCAATGCAACAAAGAAACCACGTGATGCTTCTAACAAAAATCTCACTGAAGGAAACACCGGGACTCCCGTTGCTTCAACTCAAGGACGCCTCAGAATTGCTCAGCAATTCCAGAAGAAAAGTTCTATTAACGAAGAAATGAAACACAACCTTAGTTTAATAGCAAAGAGTATAGCCACAAAAATGTTAATGGCAAGTAATCCATCTAGCACACCTGAGCAACAAAAACAGTCCATAAATAAACTTTTATCTGAAATTGGCAATCCATCAAGTATGAAAAGTAATGCAGATACAAAATCAACAAATGTAAAGGAGAAATCAGAGAAATCCGATGATAATGAAACTAAACCTTCAATTCCACTTGATAGTACTTTCCAGAAAATGGCTTTTGATTATTTCATGCGTATATTAGAGGGTATGCACGATATAATGAATGAAGTGAAAACTATTTCCAATGAGACTCGCAACATTAAGTCATTAATTTTGAAAACTGGTGATGGAAAAGTTTTGAATTGTAAACAATTATCAGAAAAATACTCTTACGTTATACCATTACCAACCATTGAAGAATTTGAAAGATTTGACAGAGAATTAGAAGATCCTCAATCCAATTTGCGTTCAGACCTGTGTATGATACTACCTGCTGGCTTAGATGGAGGGCTTTCAATGTCAAAGTGTATTGTAAAAATGTTGAAGATGTTTGTTTCAAAAGATGTTGCTGTACAATTTACAGCAGTCAAGCAAGCGAAAGGAAAGAAAATAATGAAGACTACTAATTTGTTCTCCTGTGTTGAAGCTATTATTAAAGAACGACGAAGCTTGGCAAATCTGACAACAACAGATAAAGAATTAACAGCAGCTTTGAGTGTTGTTATGACTAATGCTCAACATTGGCATAGACGCCAACAACCAGATGCAAACAAGCGCCCACTGCTAGGACACCCAAGTGAACAAGATAGTTCGTCTCAATCTGATCTTCTTTCTACCTATGAAATCTTACATGTTAAGACTAGTACTCCTATAATTCCAGAAATTGGCCATATTAAAGAGGAATACACAGAAGAAGATGTAACATCTGTAACATCAGAAATGTTACTTTATTCAGATGCATATGATAATGAAACACACATCGACGACACGCATGTTTCTCCTGATTTAAAATTAAAAATTGAAGCTGATAGTGAATATCATGAAGTGACAGACGTAGACGTAAATATTTTAGCATTAAACGATCTCATCAGTTTTACATGTACCAAATGTCGTCGAACTACTAAGAATCCAGATTACTTTAACGAAAGAACGGACATAGAGTGTTCCAACTGTCTTGCGAAAATGAAATTTCAATGCACTCGTTGTAAACTTTTATTTCGACAATTCAATAGTGCTTACAGACACGCTAGGCAAATTTGTCAAATTAATGATAATTCAATAGAGGCTCGTGGTAATTACAACTGCAAGGCTTGTACATACGAGGCTCCAAACTTAAAGGACTTACGAGTTCACTACAACAATGTACATTATAACGAAGAGACACCAGGATATGCTTGCTGGACATGCGGACGTTATTATAAAACACGCGACAGTTTGAAAAAACATGCCCGTACTTGCGGTTGTCTTCCACACATACATTGTAAATTTTGCGATTACAGTACTAAACGCCACGAGCACCTGCGTGTTCACATGCAGCGTAAACATCCAAATCCTGAAGATTGTCATGGGAATACGTATGATTGTCCAAAATGTCATAAAAAGTATAAATATCGCACGGCTATGAAATCTCACGTAAAAGTTTGTGGCAAACGAATTGGGGTAGCTACTTTTATTGAATCGACTACTGTACGGAATAATGAATTATTTCCAATGTCGCAAAACAATGCTAATTAA
- Protein Sequence
- MMSVDENTTQQRRRRRGRPSTMCEAATSNENEEHSFQCPQCPSRFTYEREVEPVIFINLDDLPYPGVEQKILVLSYNQYLHDLNLLQYMRVNNYGTNVHSSIESNINPAVCDPLTSGHYLKENTLLPFVQFNYPNQITQNYDSTTTNASLTSRSKLLINEKFPCPNCSSVYNRYDNLKQHLKYACNQEPRFACPYCKYTAKRYAELFAQNYDPLITQRPKNTNHQNAHLAYKSSLTNVCYQCGKSYAHATTLKRHLNYECNKPPRFCCSYCPQHHPQWTPKPPKPRNYTCIQCGNSYVHDFTLRRHIKYECRKPARYCCSYCPRRSKYKANVQQHILQLHPGKEVKIIVEDVPEKQRRPRNYICVQCGNAYVHNYTLRRHIKYECRKPARYCCFYCPQRSKQKANLQQHILHLHSGKRKGTPMTNATKKPRDASNKNLTEGNTGTPVASTQGRLRIAQQFQKKSSINEEMKHNLSLIAKSIATKMLMASNPSSTPEQQKQSINKLLSEIGNPSSMKSNADTKSTNVKEKSEKSDDNETKPSIPLDSTFQKMAFDYFMRILEGMHDIMNEVKTISNETRNIKSLILKTGDGKVLNCKQLSEKYSYVIPLPTIEEFERFDRELEDPQSNLRSDLCMILPAGLDGGLSMSKCIVKMLKMFVSKDVAVQFTAVKQAKGKKIMKTTNLFSCVEAIIKERRSLANLTTTDKELTAALSVVMTNAQHWHRRQQPDANKRPLLGHPSEQDSSSQSDLLSTYEILHVKTSTPIIPEIGHIKEEYTEEDVTSVTSEMLLYSDAYDNETHIDDTHVSPDLKLKIEADSEYHEVTDVDVNILALNDLISFTCTKCRRTTKNPDYFNERTDIECSNCLAKMKFQCTRCKLLFRQFNSAYRHARQICQINDNSIEARGNYNCKACTYEAPNLKDLRVHYNNVHYNEETPGYACWTCGRYYKTRDSLKKHARTCGCLPHIHCKFCDYSTKRHEHLRVHMQRKHPNPEDCHGNTYDCPKCHKKYKYRTAMKSHVKVCGKRIGVATFIESTTVRNNELFPMSQNNAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -