Tele031560.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- -
- Assembly
- GCA_026168455.1
- Location
- CM047426.1:25012925-25015957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.012 4.3 9.9 0.4 3 21 8 27 6 28 0.85 2 14 0.9 3.3e+02 4.0 0.0 2 20 34 52 33 54 0.92 3 14 0.11 41 6.9 0.4 1 12 221 232 221 241 0.90 4 14 0.11 42 6.8 0.7 1 20 362 381 362 383 0.94 5 14 0.00018 0.066 15.6 0.5 2 23 388 409 388 409 0.97 6 14 0.023 8.5 9.0 2.4 1 23 420 442 420 442 0.95 7 14 0.23 84 5.9 0.2 1 23 461 482 461 482 0.89 8 14 0.0015 0.55 12.7 0.1 2 23 488 509 487 509 0.95 9 14 4.1e-05 0.015 17.6 4.8 1 23 560 582 560 582 0.99 10 14 4.9e-06 0.0018 20.5 5.0 1 23 588 610 588 610 0.98 11 14 0.00011 0.04 16.3 4.6 1 23 616 638 616 638 0.98 12 14 1.2e-06 0.00046 22.4 0.8 1 23 644 666 644 666 0.98 13 14 7.8e-05 0.029 16.8 0.2 1 23 670 692 670 692 0.99 14 14 0.00016 0.06 15.8 0.1 1 23 700 722 700 722 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCAATAAGTTTGATGTGTCCTATGTGCTGTGGAGAAACTTTTAACAATTCAGAGTCGCTTAAGTATCATTTACTTAGTATGACTGATAATTTATATTGTCCTGGGTGTTCATTGAGAACGTATTCAGTGGCAGCATTGATACAGCATCTAGATTTATGTGGTAAAGAAAATGATCAAGAAGTTAAAGATAAAGTTGCAGAAATAAGTGAATTAGAAAATGATAACATCAAAGAGGGAGCAGATATTTTAATGGATGATAACGATGATACAATAAATGATAGTTTTTTGGCGACTGTTGATGAAGATGGAATTATGATTGTTGGAGAAGGCCGAACTATTCAAGTTGATGAAAATGGTGAAATAAAAGTTTATGACAAAATAAATTCTAATGAAGAAGAAGGAATTGTAACTTCTACAGATGATTGCGATAAAGTTACTACCAAAATGTTAAATGAAAATCAAATAGACGAAAACTCTAAAATCCATTCAATAATATCTGCTAAGAAGGATAATGTAAATGTAGATAGTGATAGTGATCTATTTCATGTAATTAATAATGAATTACTTAATGTATCACAAACTGATATGGAGATAGACTGTGATAAACAAAAAATTAAAAAAGAATCTAATGATGAGCAAGATGCAGGATTACTATATAGCTGTAGTACCTGTGGAACAAGTTTTAATTCTGTTTTGGATCATATTAAAGAATATCATGATGGGCAAGAAGTTGTATTAGAAATGGCTGAACAACAAATAAATGACATAGAAGCAAAAGCTATAGAACCGTCTCCTGTTGTTACAAATGCAACAGCTACAATGCCAACAAATAATGTTGTTCAAACAATTACTCTCCCATCAAAACAAAGACAATCAATGAACACATTAAGAACTGAAGAATGCATTGACAGTGATGGGAGATTATACACCAGAAAAGTAGTACAAATTGAAAGATTTTGGAATCGTACTCCAGTTACGCTTTCATCTACAAAAGCTCCAATGATAGAAAAATTTTTTTCTAATGTGGAAGGAGTCAAAGTTAGAGATAAAAGTGTAACAGTAGCTCCCACACGTATGTACAGGTGTAATCAATGTTTGGAACAGTTTGCCAAGTTGGTGGAATTTCGTGTTCACGTGTGCCTTCAAGGAAATAATCGATGTGATCAGTGCGATCAAACATTTGCAACAACAAAAGCGTTACAATTGCATTTGAAAGCACATGAAACAAGTGATTTTCCTTCCCAAAAGATATTTTTATGTACAGTATGTGGCACAGAATTTTTGACGCATAAAAGTTTAAGATTGCATTCTCGAATGCATGCCCCTGTTCGAGCAAGACACGTTGATGCACCTGAAGGAATGGATGAAGAAACTTTTGACTGTAGTGAATGTGGTACAACCTTATCGGAATCATATAGATCAGCACACATGGCCTTGCATGCTGGAAATGCTATCACATGTACAGTCTGTAATCGCAAATTTGATTCAGAAGAGAGTTTAGCAATGCATGCTGCAGTACATATAGAAACAAATGTCAGTTCACCAAATAATGAACTGATTATGACGAATAATCAAGACTCTTCAGAGACTGCTTTCGGTAATACTGGAACCTCCTCCACAAATACACCTGTTACAAATCTAGACTCGGCAGAATTACAAAGTCAAAAACCTTATCAATGTCAACATTGCGGACGTAGATTTACTAGGCCACATGAAAAAGTGAAACATGAAAGGATACACACGGGCGAGAAGCCACATTCTTGTGAGGTTTGTGGCAAAAAATTTCGAGTATCATACTGCTTAACTCTCCACATGAGAACGCACACGGGAGTCCGACCTTATGAATGCCAGCATTGCGGGAAACGTTTTAAAGCTTCATCCGTCTACAACCATCATTTATTGACACACGGAGAGGAACGAGCTTATACTTGTCCTTATTGTCCAAAAACTTTTAAGACTCGCGTACAACTTGCTGGCCACAAAAACAGTCACACGAAACCTTTTCGTTGTACCGAATGCTCGAGGCCGTTTGCTTCACTTTACGCTGCTCGTGCTCACATTCAGACCCACAAGAAAGACAATAATCTTAAGTTTAGTTGTAATATTTGTGGTGCTTCGTACGGTCGAGCATTTGCTTTAAAGGATCACGTAAAACAACATGAAAATGAAAGTGTGACACTGCCACCTGAACCGGCAAGAGAGGAAGAAGTTCAAGAAGTGCCGAATTTTCTTACGCATGATGAGGAAGTGATCGTTTCGACACGTTGTGATTCTGAACTTGAGGAGGAGGAATTAATTGTACCCTCACCTCCTGCGTGTGATTCCTAA
- Protein Sequence
- MGSISLMCPMCCGETFNNSESLKYHLLSMTDNLYCPGCSLRTYSVAALIQHLDLCGKENDQEVKDKVAEISELENDNIKEGADILMDDNDDTINDSFLATVDEDGIMIVGEGRTIQVDENGEIKVYDKINSNEEEGIVTSTDDCDKVTTKMLNENQIDENSKIHSIISAKKDNVNVDSDSDLFHVINNELLNVSQTDMEIDCDKQKIKKESNDEQDAGLLYSCSTCGTSFNSVLDHIKEYHDGQEVVLEMAEQQINDIEAKAIEPSPVVTNATATMPTNNVVQTITLPSKQRQSMNTLRTEECIDSDGRLYTRKVVQIERFWNRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLVEFRVHVCLQGNNRCDQCDQTFATTKALQLHLKAHETSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHAPVRARHVDAPEGMDEETFDCSECGTTLSESYRSAHMALHAGNAITCTVCNRKFDSEESLAMHAAVHIETNVSSPNNELIMTNNQDSSETAFGNTGTSSTNTPVTNLDSAELQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHVKQHENESVTLPPEPAREEEVQEVPNFLTHDEEVIVSTRCDSELEEEELIVPSPPACDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -