Tele061151.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- -
- Assembly
- GCA_026168455.1
- Location
- CM047425.1:83752508-83755887[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.035 13 8.4 0.0 1 23 321 343 321 343 0.94 2 12 0.28 1e+02 5.6 3.5 2 23 346 368 345 368 0.88 3 12 1.8e-06 0.00066 21.9 3.2 3 23 409 429 408 429 0.98 4 12 4e-06 0.0015 20.8 0.1 1 23 435 457 435 457 0.98 5 12 0.00048 0.18 14.3 2.6 1 23 463 485 463 485 0.98 6 12 0.0004 0.15 14.5 2.8 1 23 491 513 491 513 0.98 7 12 0.00014 0.052 16.0 1.5 1 23 519 541 519 541 0.98 8 12 4.4e-07 0.00017 23.8 0.7 1 23 549 571 549 571 0.98 9 12 0.0022 0.83 12.2 0.2 1 23 577 599 577 599 0.94 10 12 8.7e-06 0.0032 19.8 2.9 1 23 605 627 605 627 0.98 11 12 3.6e-05 0.013 17.8 0.3 1 23 633 655 633 655 0.97 12 12 0.004 1.5 11.4 4.9 1 23 661 683 661 683 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTAATTGAAGAACTTGATTATTTGTGCCGATTATGTGCTTCAAAGATGGGAATTTTAATGAGTTTGCCCATCTTTGAAACAGGAAAGCATGTAAGAAATATAGATAAAAAAATTGCTGCATGTCTTCCTATTCAGATTTCAGTAACAGATCATTTGCCAAAAGCAATTTGCGAAGAATGTGCTTTTAAAATAGACGAGTTTTTTGATTTTCGTGACAAGGTTTTACAAACAGAAAACATGTTTATGCAGATGTTGAAGAGCATTGATAAAGGAAAAATGAATACACTGAATGCTGTTACAATAAGTGAAATTGAAGGAAGTATTGATAGGCTTACAAACAGCATTGGCACAGATGGTCTTGAAAATAAGATTCATGATATACCTGTGAATAAAGTAAAACTTTCCAATAGAGAACAAATTGTTACACAGGAGGAAATAACTCATGAAGATAGTGATATTGGAGTTGGTAGTTTTCATTTAGATGGAGAAGCAGTAAGAATGGTAGATGTACAAATCAGAGAGGTTTCCAATCAAGAAATAGCGATGCATTTGAATGGAGAGATGTCGGTAAGCGTAGAAAATTTAGCAGTCGATGGACATTTGGGTCAACTAGATATAAATTATGTTAGTACTATTAGTTCGGAAAGTCAGGATGAAAAACCAATTGTCCAATATTGCGATGACATAAAGTTTGAGACAGTTACGCCTAAAGAACTGCAAGATAGGCTGGACCAATCCACAGGCGAACGAGAAAGAACTTTCTTTACATCTCGATTAGAAAACGACATTAATGGTGATTGCGAGGACCCTCTTAATACGACGGACGGCTCTACAAATTCTTTTTTACTGCCATCTTCACATGGACTTTTGGTAGAATACACTAAAAATGCAAAAATCGCTTTGTTTGAAAATGCTCTTAATAATCCTACGATCGACGAAACTGAATCGCATTGGTATATTTGTCCATTTTGTAATGAAGCCGCATCGGAACCAAATAATCTTGCTGTACACTTTGAGCAACATTTTTGTAATTGTACACATTGTGATTTATTTTTTACCAGTATGGAAGTGTTAAATCTTCATAGTCAAGAGTATCATCCAGACAATAAGATAAATGAGAAAGTTACTGATACTGTATTGCAAGATCAGCAACCGAGATCAGAAACAACGTCCGAGAAAAAACAACAGGGTTCCAGGCCTCAGTGGACTCCGAAAATATGTACACATTGCGGAAAAGAGTATCGAACAAATTATAAACTTCAGgaacacatgcgcaaacacacaggagaaaaaccattccagtgcgtcatttgtgggaaagcttttcgaagcaagattggtttagctcagcataccgcaactcatacaggacaatttgattttaactgttcaacttgtggtaaaggcttccaatgcaagagttatttgattgtacaccaacgtgtacactccgatctcaaaccctattcgtgctctacttgcaagcaaaacttcaaaacaaagcaatcgcttttggatcacgaaaatcgacacatgggcgttaaaccctatacatgcgaaatttgcggaagaggttttataactaaaggtctctgtaagagtcatcaaaaaatacactcgggtacggataacagacaatatccatgtgttgtgtgtaacaagagatttgtgagcaaaagttacctcaatacgcatttgaggattcatacaggcgagaaaccctatttatgcgagAtatgcgggaaaggcttcttaacaagggttgacctaaaaattcactctacaatgcacactggcgaaaagagcttcaaatgcgatttatgtggtaaagttttcgcaaggagatcggctttacgctgtcacagacgctcacacacgggagaaagaccttatgcatgcgaaatatgtggaaaaacgttcacacaatttagtccaatggtaatacacaaacgattacacaccggtgaacggccttatcagtgtgatgtttgtagcaaaacatttgtatcgaggtccacaatgatgtgccacaggaaaaagcatAATTCAAACGAGTCAACGTCGGAACAGAAATCGACAAAAGAACACGTAACACAGCAACAAAAAGAACCAACTTCTAAAGAGACGCAGGATATTATTAGCGTCTCAATAAACGCGGAATAA
- Protein Sequence
- MSVIEELDYLCRLCASKMGILMSLPIFETGKHVRNIDKKIAACLPIQISVTDHLPKAICEECAFKIDEFFDFRDKVLQTENMFMQMLKSIDKGKMNTLNAVTISEIEGSIDRLTNSIGTDGLENKIHDIPVNKVKLSNREQIVTQEEITHEDSDIGVGSFHLDGEAVRMVDVQIREVSNQEIAMHLNGEMSVSVENLAVDGHLGQLDINYVSTISSESQDEKPIVQYCDDIKFETVTPKELQDRLDQSTGERERTFFTSRLENDINGDCEDPLNTTDGSTNSFLLPSSHGLLVEYTKNAKIALFENALNNPTIDETESHWYICPFCNEAASEPNNLAVHFEQHFCNCTHCDLFFTSMEVLNLHSQEYHPDNKINEKVTDTVLQDQQPRSETTSEKKQQGSRPQWTPKICTHCGKEYRTNYKLQEHMRKHTGEKPFQCVICGKAFRSKIGLAQHTATHTGQFDFNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCSTCKQNFKTKQSLLDHENRHMGVKPYTCEICGRGFITKGLCKSHQKIHSGTDNRQYPCVVCNKRFVSKSYLNTHLRIHTGEKPYLCEICGKGFLTRVDLKIHSTMHTGEKSFKCDLCGKVFARRSALRCHRRSHTGERPYACEICGKTFTQFSPMVIHKRLHTGERPYQCDVCSKTFVSRSTMMCHRKKHNSNESTSEQKSTKEHVTQQQKEPTSKETQDIISVSINAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -