Tele030046.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- SCRT1
- Assembly
- GCA_026168455.1
- Location
- CM047426.1:9947738-9951309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00052 0.19 14.2 2.5 1 23 278 300 278 300 0.95 2 12 5.2e-05 0.019 17.3 1.2 1 23 308 330 308 330 0.98 3 12 6.1e-06 0.0023 20.2 0.6 2 23 338 359 337 359 0.97 4 12 5.5e-07 0.00021 23.5 0.7 1 23 365 387 365 387 0.99 5 12 2.8e-05 0.011 18.1 2.3 1 23 394 416 394 416 0.98 6 12 2.6e-05 0.0095 18.3 0.2 1 23 422 444 422 444 0.95 7 12 5.4e-06 0.002 20.4 0.1 1 23 450 472 450 472 0.98 8 12 5.4e-07 0.0002 23.6 1.2 1 23 478 501 478 501 0.96 9 12 2.8e-06 0.0011 21.3 0.5 1 23 507 530 507 530 0.96 10 12 4.3e-06 0.0016 20.7 2.8 1 23 536 558 536 558 0.99 11 12 7e-05 0.026 16.9 0.4 1 23 564 586 564 586 0.94 12 12 0.00028 0.11 15.0 0.2 1 23 592 616 592 616 0.94
Sequence Information
- Coding Sequence
- ATGCCAGCAAACTCCGAAAAAGAAAGCATATTATGTCTACTTTGCGATAGTAAAGTAGGATCGTCTAGGAACAGCATTAATATATTTGGAGACAATGCTGTAACAAATTCGGAAAAACCTATAATTGATATTCTTTCTCTTTCGTTACAATCAACTTTAAATAAAGAAAATACACATTCATCAATAATTTGTAAAAAGTGTTACAAACTTGTTAATGAGGCTGATGAATTAGAAAATAAGTTAGCAGAAATTAAGTTAGAAATTTGTAACTTATATCACAAGACAATATCAAAATATTGTGAAGAAAAAATTTCAAAAATAGAACCTACAGAAGAATACACTGATCATGACTACATTGACAATGTAGAAACTATTGAAACAGTGTCTGTAGTAACAGGTACAGAAAAAGTTAAAGATGTTAAAAAAGAGGACAAGAAAATAAAGAAAACAAAAACAATCAGTCATTTAGAAGTGGCAGCTAATGCTCCAATTTTAATTGTCAAACAAGAAGAAATTGTTCCTATTGTAAAAGATACAGCAGTAATTACTGAAGAGGAAAGTGAAGATAATGTGGACAACGAGGATGATCAAGATAATAATGTTGAAGACATAACTTTAGTTGACAATGATGCCCAAGTTGAGGAAATTGAAGAAGTAATTATAGAAGAAAAGAATCCTGATATAAAAGAAGAATTTAAATGCACTGCAAATGATTTGGTAACAAGAGAAGGAGACAATTACATTTGTGTATTATGTTCAGATGAGTCTAAAGAACTTAGAGATGCTAAAACTATTATTACACATTTAAAGGAAGCTCATGACACAAGACTATATATCTGTGATCTTTGTGGAGAGCACTTTAGAAAAAGAACAGAATTGTCTCATCATTTGGATGATCATATAGCAAAAGAAGAAGGTGATTTCCAATGTGAAGTGTGTAATAGAATATTTAATAATTTAAGGCTTTTCCGGATTCACAAACGAATACATTATCCTCAAGTTAAATCGTGGACTTGTGAAACTTGTGGTAAACGTTACAGTTCAAAAAATCTTCTTGATGAGCATATGAATACACACACTGGAAATCGACCATACGTTTGTGAAACATGTGGTAAAGACTTTGCTTCAAAGTACACTTATCGAGCGCATATTAAAACGCATCTAGTTAGACCTCGACCATTTGAATGTACACAATGTAACAAAACGTTCCTTAGTCAACAAAATTTGACACAACATGTCAAAACACATAATGGAGTTAAAGAGTACATTTGTCAACAATGTGgaaaagcttttggttctgcacataatctcgaggttcataatattgtacatactggttataaaccatacatttgtcggatttgtggtaaagcatttgcacgaaaagccgaaatccgtgatcatgaaagaacacacacaggtgaaaaaccttatcagtgtgaattttgtggagctacgtttagccagaggtcaaatttacaatcgcataaacgagcaacgcattacaatgataaaagatataaatgtgatgattgcggtaaaggttttaaaagaagaagattattagattaccatattaaagcagctcacaccggagaacgtccttataaatgtgaaacatgtacagctacatttgtttatccagaacattttaaaaaacatatgcgtattcacacaggagaaaagccttatttatgcgaagtttgtggaaaagcttttaatagtagagataatcgtaatgcacataggtttattcacagtgataaaaagccttatgaatgtttagtttgtggaatgggatttatgcgaaaaccattgctttatactcatatgcaaactcaaGGTCACTTAAATGATACTATTGTTGTTAATCAACCAAGACTGACTACAGAGGATGATGTGATTATTCAAGAAAATAGGGTTCACATAGTTATGGACAGCGATTCACCCACTATTGACGAAAGTGGACAATTATACGTAACGGAACTAAAGGATCACGTAATAATCCAAGATGGAGACCAAGAAAATGTTTTAAGCCTTACCGAAGGTAACATAAGTAGCGACGAAATTAATCAACTTGTAGTAGATGGAGAGATGTCCTTTGAAGATCAAGATAAGGATCTGGAATGTAAAACAGAAGAGTCAGAATCAGTTGACGAAGTTTATAGTTACCAAGACTCAGAAGGTAACACAATAGTCTTACCAGCTGGTACCGACCTTAAAGATATTATTGGTGATGGAAATAAATCGATAAGACTTGTAGAGATTCGAATACCATCAGATGCAAATGTCGAAGGAAGAAGTTGGTTGAGCTTAGTACAAAACTCGCAGTCCTAA
- Protein Sequence
- MPANSEKESILCLLCDSKVGSSRNSINIFGDNAVTNSEKPIIDILSLSLQSTLNKENTHSSIICKKCYKLVNEADELENKLAEIKLEICNLYHKTISKYCEEKISKIEPTEEYTDHDYIDNVETIETVSVVTGTEKVKDVKKEDKKIKKTKTISHLEVAANAPILIVKQEEIVPIVKDTAVITEEESEDNVDNEDDQDNNVEDITLVDNDAQVEEIEEVIIEEKNPDIKEEFKCTANDLVTREGDNYICVLCSDESKELRDAKTIITHLKEAHDTRLYICDLCGEHFRKRTELSHHLDDHIAKEEGDFQCEVCNRIFNNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLDEHMNTHTGNRPYVCETCGKDFASKYTYRAHIKTHLVRPRPFECTQCNKTFLSQQNLTQHVKTHNGVKEYICQQCGKAFGSAHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVIIQENRVHIVMDSDSPTIDESGQLYVTELKDHVIIQDGDQENVLSLTEGNISSDEINQLVVDGEMSFEDQDKDLECKTEESESVDEVYSYQDSEGNTIVLPAGTDLKDIIGDGNKSIRLVEIRIPSDANVEGRSWLSLVQNSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -