Tsol001639.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- -
- Assembly
- GCA_947397855.1
- Location
- OX377614.1:25379413-25383616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.079 4.8 8.1 1.3 2 20 392 410 391 412 0.92 2 15 0.0019 0.12 13.1 1.5 2 19 458 475 457 477 0.95 3 15 0.6 37 5.3 0.3 3 23 520 541 519 541 0.94 4 15 0.00019 0.012 16.3 4.5 1 23 576 599 576 600 0.96 5 15 4.1e-07 2.5e-05 24.7 2.9 1 23 608 630 608 630 0.98 6 15 3 1.8e+02 3.1 0.0 3 21 641 659 639 660 0.91 7 15 1.8 1.1e+02 3.8 0.2 1 20 680 699 680 700 0.93 8 15 0.012 0.7 10.7 3.8 1 23 709 731 709 731 0.96 9 15 1.2 74 4.3 0.3 1 23 747 772 747 772 0.96 10 15 0.014 0.84 10.4 2.2 1 23 784 807 784 807 0.96 11 15 0.02 1.2 9.9 3.7 2 23 813 835 812 835 0.96 12 15 0.01 0.62 10.8 1.8 2 23 839 861 838 861 0.88 13 15 2 1.2e+02 3.6 5.6 1 23 867 890 867 890 0.90 14 15 0.014 0.83 10.5 0.6 1 23 895 917 895 917 0.98 15 15 8.9e-06 0.00054 20.5 2.1 1 23 923 945 923 945 0.99
Sequence Information
- Coding Sequence
- ATGGCAGCTAATGTTTCCACACTCACCAGTATCTGTTTATATTGCGGGGTCTCAAGAACCGCTATTGACAATGATTTTCACGAAATTTTTAATGAAGTTGGTCTGGAAATGCAATTGCCACAATTAGTTGAAAATATTTTTGGCATAAAAGTAAAGAATGAGAGCAAAAAATATTTATGTGATGATTGCGTTAGCCTTCTAATTGAGTTGTATGATTTGGAGGAACATAAAAGACAGCAAAGTATTAATACAGCTGAAGCAAAGGTGTCTGATTCAAATGAAGATCACCAAAATAACACATTTAATGAATTTATAACGGAAAATGAATTGCAAGTTTTTGACTCATTTACAAATTTTGATCATTTAAAAGAAAATATAACTAATTCTAATGATGGAGATTCTTTGGAAGAAGAATTTATCCAAATTAATAATAATATAAGCAGTAAATTGCCCCAGCTCGTGCCGATCAGTAATCAAAATAATTCATCAAACTTTATCACCTCAACTTCTACCAGCCAGCAGGATTCTGAAATTATCGAAGATGATGAAGAACGAAATTCAGATATCGAATTCATGGTTAATAGGAAGACAAACAATATAACTGATAAATTACAATTACAAGAAAATCAAGAAACTATTATACATGATGATGAGATAATTATTGTAGAAAGTGAAGAAAATGACAGTAATTTAGAGTTTATTGAAGAAACTAGCTTAATGGCGGATACTATGGAGGCGGAAGAAAAATTAGAGGAAACTTTGCTAGTTATTGATGCGACACATTCTCAAACTGGAGACAATAATGAAGAACTTAGCTTAGAAGATGTATTTATAGAAGAGCTTGAGGATATTTCTAAGGAAGACGCTTCAATAGCAAATAAAGCCAAGGGATGTACAATGAAAAGTTCAAATATAAATTCGTTATTAAAAATCAGTGTCAATGAAACAGTCTCAAACGATACAATCGAATTCCAAAATGAGTTGAGTTGTGCAGAGGATGGAAATTATACCCATGGCGAGGAAGAAGATTCAATTGATAGTACTTTTTTCGAAGAGGAGTATTTAATAGAAGAAACAAGATGTTCTGAGGAATATGATAATGTTGATCTGAATGAATATTTGGGCAATAATTTAAAAACCAAATTTCAAGACTTGCATATTAATTGGAAAACGGAATGCAAATTGTGCAGCAAGAAATACAATAAGTTTGAAGAATTAATAAAACATGCATGCATAAGAGACTATGAAAATAAGCAACAATTTGGCTGTGTGATCGAAGATTGTGAAAAAATTTTAGACAATTTAGCTACTTTTGCAATGCATTTAGTACTGCAACATTACGATAAACTGGAAAGCATACCAATTTATGGTAAATGTCCAGATTGCCAAAAAAGTTTTTCAAATATAATAGATTTTAATAAACATTCTTGTTGCCGCAATATAAAACGTAAACCGGGGACACCAAATTATTGTCAATATTGTGACATGGACTTCCAGTCGTTGAAAAGGTATGTGTTTCACATGCAGTTTCATTTAACGAATCGTCGTCCCAAAATATGTTTATTATGTGGGGATATATTCAATAATTCTAACGATTTTTTTGAACACACTCAATATCTACATACTCAAAAAAATGATATGGCATGTATTAAATGCGATCGCTTCTTTAAGGAAAAATATATATATGACAGTCATATTGAATTGCATAAAGATTCAAAATTTGTGTTTACCTGCTCGTTGTGTCCCAAAAAGTATACCAGTAAAGCTTCTTTATGTCAACACATGGATGTTTATCACCATGAAAATAATAATTTCAAAGCCTTCGAATGTGATCACTGTGGTAAAGAATTTGTTAATAAATCCTCATATCGTAATCATATGCAAAGTCATGCAAATGATAATCAAGTGAAATCATTGATATGTTCAGCATGTGGTTTTATAACCAATAGCTTGGACAATATTAAGACTCATATTGAATCGGATAAAGATTCGCCTTGTTATTTATCTCCAATAGATGAGAAAATTTTAAACCTAGGCTATACCTGTGAAAATTGCTCCATTGATTTTCTTACAATTAATGACCTCAAACAGCATCGTTTATGTAAAACACACAACGATGACTTATACTATTGTGGTACATGCCGAAAAGCTTTTAAGAGCCTGCGGCACATGCGAAACCATTCTACTGTTCACAAGGATGTCAAAGATTGGAAGCAATTGTTTCCAATAACACGTTATTTTGTCTGTACAATAGGTGACTGCAGAGAGTTTTATCCCATTTGGACAACGTTGTATTACCACAAAAAACGTCCACATAAAATTCAGGACACCCCAAGTTTAGCCAACGAGTTTAAATGTCAATTTTGTCAACAAATGTGCTCTTCAAAAATGTCTTTGGCCGTTCACGTTGCTAGAAGTCATAATAATTCTAACGTAAAATGTCCTCACTGCAATCGAAGTCATAAATCTCAAAAGGCATTACAAGAACATATTGATAAATTTCATATACCCGTTGAATGTGATATTTGCTTTAAAAAATTTAAAAACCGACGCAATTTGAAATTTCACAATAATTCAGTGCATCTTAATGTAAAGCGATATTTTTGCAAACACTGTAAAAAAGGATATTTTCATAAAAGTGAAAGAGACTTACACGAATTAAAAGTTCATCCGAAAACATCTTTTAAATGTGTATTATGCAATTTTGTTACAACTTATGAGGAGTCTTTTGAAATTCATATGGACAAGCACAAAAATCAATTAAAATTTAAATGTGTCGAATGCGGTAGAAAGTTTGGGCGTAAGCAACTTTTGAAAAATCACTTAAAAAGACATATTAACGCTAACTACAGCTGTGTCAAATATTTGAAAGGAACAGATTGTAAAGCAACGTTTCTTACAAGAAAATTATGGGTAAATCATGTTTTAAGTGAACATAAAGAACATAAACAAACAAAGCTTTTACAAATGGTAGAAGATATGGATTTTGAGTTATTAATTACTGATGATGATAGTAAGAGTGATAAGGATACGGAAATCTTGGCTGATGTGGCATTAAATGATGAGGTCTTTGAACTATTGTCGGAAAGTGATGAACAATAA
- Protein Sequence
- MAANVSTLTSICLYCGVSRTAIDNDFHEIFNEVGLEMQLPQLVENIFGIKVKNESKKYLCDDCVSLLIELYDLEEHKRQQSINTAEAKVSDSNEDHQNNTFNEFITENELQVFDSFTNFDHLKENITNSNDGDSLEEEFIQINNNISSKLPQLVPISNQNNSSNFITSTSTSQQDSEIIEDDEERNSDIEFMVNRKTNNITDKLQLQENQETIIHDDEIIIVESEENDSNLEFIEETSLMADTMEAEEKLEETLLVIDATHSQTGDNNEELSLEDVFIEELEDISKEDASIANKAKGCTMKSSNINSLLKISVNETVSNDTIEFQNELSCAEDGNYTHGEEEDSIDSTFFEEEYLIEETRCSEEYDNVDLNEYLGNNLKTKFQDLHINWKTECKLCSKKYNKFEELIKHACIRDYENKQQFGCVIEDCEKILDNLATFAMHLVLQHYDKLESIPIYGKCPDCQKSFSNIIDFNKHSCCRNIKRKPGTPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKICLLCGDIFNNSNDFFEHTQYLHTQKNDMACIKCDRFFKEKYIYDSHIELHKDSKFVFTCSLCPKKYTSKASLCQHMDVYHHENNNFKAFECDHCGKEFVNKSSYRNHMQSHANDNQVKSLICSACGFITNSLDNIKTHIESDKDSPCYLSPIDEKILNLGYTCENCSIDFLTINDLKQHRLCKTHNDDLYYCGTCRKAFKSLRHMRNHSTVHKDVKDWKQLFPITRYFVCTIGDCREFYPIWTTLYYHKKRPHKIQDTPSLANEFKCQFCQQMCSSKMSLAVHVARSHNNSNVKCPHCNRSHKSQKALQEHIDKFHIPVECDICFKKFKNRRNLKFHNNSVHLNVKRYFCKHCKKGYFHKSERDLHELKVHPKTSFKCVLCNFVTTYEESFEIHMDKHKNQLKFKCVECGRKFGRKQLLKNHLKRHINANYSCVKYLKGTDCKATFLTRKLWVNHVLSEHKEHKQTKLLQMVEDMDFELLITDDDSKSDKDTEILADVALNDEVFELLSESDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -