Tsol001366.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- grau
- Assembly
- GCA_947397855.1
- Location
- OX377614.1:17804643-17810121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00016 0.0099 16.5 2.3 1 23 265 287 265 288 0.94 2 17 0.042 2.5 8.9 2.5 1 23 296 318 296 318 0.96 3 17 7.1 4.3e+02 1.9 3.5 2 23 327 352 326 352 0.83 4 17 0.0031 0.19 12.5 1.7 3 23 359 379 358 379 0.98 5 17 0.01 0.64 10.8 0.5 2 23 388 411 387 411 0.91 6 17 0.012 0.7 10.7 1.4 1 21 418 438 418 441 0.93 7 17 0.00018 0.011 16.4 0.5 1 20 446 465 446 468 0.92 8 17 0.0053 0.32 11.7 3.5 1 23 474 497 474 497 0.98 9 17 2.2 1.3e+02 3.5 0.4 6 23 769 786 769 786 0.93 10 17 0.00018 0.011 16.4 4.2 1 23 792 814 792 815 0.94 11 17 0.00058 0.036 14.8 1.5 1 23 823 845 823 845 0.96 12 17 4.4 2.6e+02 2.6 0.8 2 23 854 879 853 879 0.85 13 17 0.026 1.6 9.6 0.7 3 23 886 906 885 906 0.97 14 17 0.16 9.9 7.1 0.3 2 23 915 938 914 938 0.91 15 17 0.00047 0.029 15.1 2.7 1 23 945 968 945 968 0.97 16 17 4.9e-06 0.0003 21.3 1.2 1 23 973 995 973 995 0.97 17 17 0.00037 0.022 15.4 4.3 1 23 1001 1024 1001 1024 0.98
Sequence Information
- Coding Sequence
- ATGTTGTGCTGTATATGTTTATTGGAAACTCCGAAAATGTTAAGCATTTTCGATGAAGAGGGAGTAAAACTTAATATAGCTAACATAATAGATAAACACTTTTGGTTCAAGACACAACCAGATGATGCACTCACATCCCATATTTGCACCATTTGCTGGGGTAAAATTATAGATTTTCATGAATTTTATAACAATGCACAAAAAGTGCATAAATCATTTCAAAAATGCCATCAGCACATAGAAATTAAGAAAGAGGACATTAAGCAGGAGAATGATCACGAGAAATATTTTTTTGTAGATAACGTTCCGCAAGTCGAGTTGGGTTTTAAAAAGGTTGCAGAAACTGAAGAAACTACTTTAGAGAAAAATCCTCTTGAAACTGAAGATTTACAGTTACATATAGATAAAGAGAATTTAAAAAATTTACGTGGCAGCGTGTCTGACGATATATCGAATGAAGACTTAACGGTTACAATAGATGTAACAAAACAAGAAGAAAAGAAAACTAAAACCAAGCGCAAAGACCCAAATGTACTAGAAGAAAGTGACTCGTCTAAAAGGAAAAGAATTTCTGTTCTATTAGATCCAATAGTTGCAGAAGAACTGGTTAAGAAGCACATACTAATGTTGTGCGATTTATGTGTATTTTTTGGAAACACATTTTCAGATATTGTAGCACATTTCAAAAAACATCACACCCAAGTGAAGCCTTACATAATGTGCTGTGACAGAAAATTTTTAAGAAATTATAGTATAGAACAGCATGCCTTATTTCATGAAAATCCAGATTCATTTAGGTGTAATGATTGCAATAGGTCATTTACAACAATAAATGGCTTAAAGGCACATAATTTAAACCACCATTCCCCTGAAGAAGAACGGATGCATGCTTGTGACTTTTGTCCAAGACGTTTTGGAATACGGCATTTATTAGAAATACATAAACAAACGCATATACCCAAAGAAGAATGGACTATAACATGTACAAAGTGTACAAAACGTACAGTTAAATTCGTTTCTCAATACTTATTGAATAAACATAATAGCATGTTCCATAAAAGAGAAGCCAACATCTGTCATGTTTGTGCAAAAGAAATAAAAAGGAAAAATGAGTTCGAAAAACATATACGTTCACATTTTGAGGATAGTGGACCTCGCGTTAAATGCTCTTATCCCAACTGTGAGCGTTGGTTAAAAGATAAAGACAATTTGAGAACTCATATGCAAACACATAATCTGACAGGAAAGGCACATATTTGTCCAGAGTGTGGAAAACAATATCCAAATGGTAGAGCACTAACGAGTCATAAGCGTTGTGTACACTCACGTAATACATTCCGATGTGAAGCGTGTGGTAAAACCTTTAAAAAAGCTATTTCGTTAAAGGAGCATATGCCTAAACATACTGGTGAGACTTTGTATAAATGTCCCTTCTGTATAAAAACATTCAATTCAAGTGCCAACATGCATGCCCACAAAAAGAAGCAACATTTCAATGAGTGGCAAGAACTAAAAAGAAAAAACAAATTAAATAATATGCTGTGTTGTATATGTTTATTGGAAACTCCAAAAATGCTGGGCATTTTTGATGAAAAAGGAATAAATCTACATATAGGAAATATTATAAATAAATATTTTTGGTTTGAGACAAATCCAGATAATGTACTTACATCCCATATTTGTACAATTTGCTGGCAAAAAATTGAAGAATTCCATGAATTTTATAACACCGCAGAAAAAATACACAAATCATTTGAGAAATATCAACAGGCAGATATTAAGGAGGAGCAAGCAGATTTCATTAAAAGGGAAACAGATCAAGATGAAGATTCTTTTAAAAATAACATTGACGAAATAGATTTTATCAAAGTTACAAAAAAAGGTGCAGTTATATTAGAGAAAAATCCTCTTGAAAGTGAACAACAACAACTTGATTGTATTGAAGGGGAATTTGCGAATGAAGATAGTAACATGTCCGATGATTATGATTATGAACCTTCAGAAAATAGTGAACTGGAAAACATATCAAATGAAGAGCTAACTGAAAATATAAATGTAAAGAAACAAGGGGAAAGAAATACTACTAAATGCAAGAAATTAAATAAATTAGAAGGACACAATGACATACTCAAAAAGATAAGAAAACGAAATTCTCATCTGTTAGATCCAATACTTACGGAACAATTAGTTAAGAAACACATACCAATGTTGTGTGATTTATGTGTATTTTCTGGGAATACATTTTCCGATATTGTAGCACATTTTAAAGATGATCATATGGAAGTGCAACCTTACATAATGTGCTGTGACAGAAAATTTACAAGAAGTTATTGTATAGACCAACATGCGATAATCCACGAAAATCCCGATTCTTTTAGATGTAATGATTGCAATAGATCCTTTACCACAACTTATGGCTTGCGGACACATAACTTAAATCATCATGCGCCTGAAGAGAAACGTATACATGCCTGCGAATTTTGTCCAAGACGTTTTGGTAGAAGGCAATTGTTGGAAGTACACAGACAAACACATATACCCAAGGAAGAATGGACTATAACATGTACAAAGTGTACAACACGTACAGTTAAATTTGTTTCTCAATACTTATTGAATATACATAATAGCATGTTTCACAGAAGAGAAGCCAACATTTGTCATGTTTGTGCAAAAGAAATAAAAGATAAGAAGGCGTTCGAAAAACATGTTCGTGCACATTTCGGGGATACTGGACCACGCGTTAAATGTACCTATCCTAATTGTGAGCGCTGGTTAAAGGATGAAGATAATTTAAGAACTCATATGCAATTGCATAATTTATCAGGAAAAACATATAAATGTACAGAGTGTGAAAAAGAATGCCCAAATCGCAGGGCACTAACGAATCATAAGCGCTATGTGCATTCAGGTCATACTTTTCGATGTGAAGAGTGTGATAAAACATTTAAAAAGGCTATTTCATTAAAGGAGCATATGACTCAACATACTGGTGAGACTTTGTATAAGTGCCCCTTCTGTACAAGAACATTCAATTCAAATGCCAATATGCACGCCCACAAAAAGAAACAACATCCGAGTGAATGGAAAGAGTTGAGAAGAAAAAATCTTGGCCCATTACCAAAGTAG
- Protein Sequence
- MLCCICLLETPKMLSIFDEEGVKLNIANIIDKHFWFKTQPDDALTSHICTICWGKIIDFHEFYNNAQKVHKSFQKCHQHIEIKKEDIKQENDHEKYFFVDNVPQVELGFKKVAETEETTLEKNPLETEDLQLHIDKENLKNLRGSVSDDISNEDLTVTIDVTKQEEKKTKTKRKDPNVLEESDSSKRKRISVLLDPIVAEELVKKHILMLCDLCVFFGNTFSDIVAHFKKHHTQVKPYIMCCDRKFLRNYSIEQHALFHENPDSFRCNDCNRSFTTINGLKAHNLNHHSPEEERMHACDFCPRRFGIRHLLEIHKQTHIPKEEWTITCTKCTKRTVKFVSQYLLNKHNSMFHKREANICHVCAKEIKRKNEFEKHIRSHFEDSGPRVKCSYPNCERWLKDKDNLRTHMQTHNLTGKAHICPECGKQYPNGRALTSHKRCVHSRNTFRCEACGKTFKKAISLKEHMPKHTGETLYKCPFCIKTFNSSANMHAHKKKQHFNEWQELKRKNKLNNMLCCICLLETPKMLGIFDEKGINLHIGNIINKYFWFETNPDNVLTSHICTICWQKIEEFHEFYNTAEKIHKSFEKYQQADIKEEQADFIKRETDQDEDSFKNNIDEIDFIKVTKKGAVILEKNPLESEQQQLDCIEGEFANEDSNMSDDYDYEPSENSELENISNEELTENINVKKQGERNTTKCKKLNKLEGHNDILKKIRKRNSHLLDPILTEQLVKKHIPMLCDLCVFSGNTFSDIVAHFKDDHMEVQPYIMCCDRKFTRSYCIDQHAIIHENPDSFRCNDCNRSFTTTYGLRTHNLNHHAPEEKRIHACEFCPRRFGRRQLLEVHRQTHIPKEEWTITCTKCTTRTVKFVSQYLLNIHNSMFHRREANICHVCAKEIKDKKAFEKHVRAHFGDTGPRVKCTYPNCERWLKDEDNLRTHMQLHNLSGKTYKCTECEKECPNRRALTNHKRYVHSGHTFRCEECDKTFKKAISLKEHMTQHTGETLYKCPFCTRTFNSNANMHAHKKKQHPSEWKELRRKNLGPLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -