Basic Information

Insect: Thelaira solivaga
Gene Symbol: -
Assembly: GCA_947397855.1
Location: OX377610.1:82067252-82069117[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0036 0.22 12.3 4.6 3 23 306 327 305 327 0.95

2 8 0.068 4.1 8.3 1.3 2 23 335 357 334 357 0.87

3 8 7.2e-07 4.4e-05 23.9 0.5 1 23 376 399 376 399 0.97

4 8 1.6e-05 0.001 19.6 0.5 1 23 423 445 423 445 0.95

5 8 1.2e-05 0.0007 20.1 1.0 1 23 451 473 451 473 0.96

6 8 2.6e-06 0.00016 22.2 2.4 1 23 479 501 479 501 0.98

7 8 2.1e-06 0.00013 22.5 2.7 1 23 507 529 507 529 0.98

8 8 0.026 1.6 9.6 3.1 1 19 535 553 535 559 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0036	0.22	12.3	4.6	3	23	306	327	305	327	0.95
2	8	0.068	4.1	8.3	1.3	2	23	335	357	334	357	0.87
3	8	7.2e-07	4.4e-05	23.9	0.5	1	23	376	399	376	399	0.97
4	8	1.6e-05	0.001	19.6	0.5	1	23	423	445	423	445	0.95
5	8	1.2e-05	0.0007	20.1	1.0	1	23	451	473	451	473	0.96
6	8	2.6e-06	0.00016	22.2	2.4	1	23	479	501	479	501	0.98
7	8	2.1e-06	0.00013	22.5	2.7	1	23	507	529	507	529	0.98
8	8	0.026	1.6	9.6	3.1	1	19	535	553	535	559	0.94

Sequence Information

Coding Sequence: ATGCGTATCTGTTGCATTTGCCACAAAAAAATTAAAAGTGATAAAACATTTTTTAAAATTCCAAAAAATGAAAGAAGAAGAAGAAAGTGGAGTAAAATATGTGGCATTCATTTATCAGCAAGCGGCAGTATATGTGGCGATCATTTTTCATCTTCTGACATGATAAAAGGTCCACACAATATGTTATTAGCTCCAAATGCTGTGCCATTCGTGGCCCAAATAAAAGATAAAGAAATTGTACAGCGCAACAATATTCTAGATATTGGTTTGGGTAAAAACACATCCCTTGAATATGTACATATTAACACTATTTATGGTAAATTAAGTCAGGACTGTCGTTGCTGCACTAATCCGTCTTCGAGTTTTAAACAACTTGATAGTTATATTAATCCAAATGAAGGAATTGAAAATACTTTCAAGGATATCTTGTATGAAATAACTAAACTTGATATAGCGACATATTACGAAAACATTCTGCCTCAACAAATTTGTCAGAAATGTGAAGATCAACTGAAAAATTCTTTCAAATTTATACAGCAGGCACGCGAAGTTTCTCAGCAATATTTAAACTTAATAAACCAAACGGATACTTACCAGGATGATATAAAAAATATGGAGCATTTACGGGAATCGCTTATAGAATTAGCAGAAGCGTCAAATGCAGACCAAGTAAACGAAGGCTTAAAATCTGAGCCTTTAAATATAGAATATAAGACGGAAATAAAAGAAGAAAATGTAGACTGTAAAATTTTTATGCAAACAGTTTTAAAAAATGACGAATCTCAAGAGAATACAATTTTTTTACAAAATTCTAATTGTGAAGATCATTCATCCGAAAACGAAGAACATAGTGATGAACTGGAATCGATTAAAGCTTTTGGTACAGATCTAAATAATGAGTCCATAGCTCGATGTTGTGATATATGCCATAAGGTTTATAGAAATGAAAAATTTCTTAAAATACACAAACGGTATGCTCACATGCCCGAAGAAGATAAATTACCTTGTCCATTATGTTGTCATAAAACTAGCCGATCGTCAGCCTTAAAGGTGCATATGGGTTTAGTCCATGGTGCTGATAAAGTTAATGAGTATTTTAAGCCTGTGCTGGATTCTGATAAAAAATACCCATGCAATATATGTCCCCGTTCATACGTTCGGAAAGACAGTTTACAAAAACACGTTAAAAGCAACCATCTAAATAAATCGTCTAAAAAAGATGAACAGAAAAAATCGAAAATTCTAAAACCAAAAGAAAAACATCGTTTTCTTTGCACTTACTGCGGACGATCATTTAATTctaaaaatggtttggaaagtcatgctttaatgcataccggggaaaggccattttcatgtgagatatgtagcaaaacttttaaacgcctaaaggatttacaactacatcgggttatacatattgatgagaaaccccatcagtgtacggagtgtggtaaagcatttaaacgtgccgataagttaaaatttcatatgcgagttcattctgaacttaggccttacaaatgtaatgaatgtgaaaaaactttcaagtatcccagtgtattacgaactcatatgcatatacataccggccaaacgccattttcatgcaaaacctgcggtgaagcgttCTCATTAAGAACATCATTGAATTATCATTGCTTAAAAAATAGTCACGTAAAATAA
Protein Sequence: MRICCICHKKIKSDKTFFKIPKNERRRRKWSKICGIHLSASGSICGDHFSSSDMIKGPHNMLLAPNAVPFVAQIKDKEIVQRNNILDIGLGKNTSLEYVHINTIYGKLSQDCRCCTNPSSSFKQLDSYINPNEGIENTFKDILYEITKLDIATYYENILPQQICQKCEDQLKNSFKFIQQAREVSQQYLNLINQTDTYQDDIKNMEHLRESLIELAEASNADQVNEGLKSEPLNIEYKTEIKEENVDCKIFMQTVLKNDESQENTIFLQNSNCEDHSSENEEHSDELESIKAFGTDLNNESIARCCDICHKVYRNEKFLKIHKRYAHMPEEDKLPCPLCCHKTSRSSALKVHMGLVHGADKVNEYFKPVLDSDKKYPCNICPRSYVRKDSLQKHVKSNHLNKSSKKDEQKKSKILKPKEKHRFLCTYCGRSFNSKNGLESHALMHTGERPFSCEICSKTFKRLKDLQLHRVIHIDEKPHQCTECGKAFKRADKLKFHMRVHSELRPYKCNECEKTFKYPSVLRTHMHIHTGQTPFSCKTCGEAFSLRTSLNYHCLKNSHVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01427523;
90% Identity: iTF_01427523;
80% Identity: iTF_01427523;