Tsol006941.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- -
- Assembly
- GCA_947397855.1
- Location
- OX377613.1:8127693-8132289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 10 7.0 0.9 1 23 279 302 279 302 0.93 2 13 0.019 1.1 10.0 1.1 2 23 381 403 380 403 0.95 3 13 1.7e-05 0.0011 19.6 0.7 2 23 742 763 741 763 0.97 4 13 0.0004 0.024 15.3 2.9 1 23 769 791 769 791 0.97 5 13 1.6e-05 0.001 19.6 3.4 1 23 799 821 799 821 0.98 6 13 0.17 10 7.0 0.5 1 23 827 850 827 850 0.95 7 13 0.012 0.73 10.6 0.5 1 23 974 996 974 996 0.96 8 13 0.0025 0.15 12.8 1.5 1 23 1002 1024 1002 1024 0.97 9 13 0.0076 0.47 11.2 7.3 1 23 1030 1052 1030 1052 0.98 10 13 1.1e-07 6.5e-06 26.5 0.2 1 23 1058 1080 1058 1080 0.99 11 13 8.8e-05 0.0053 17.4 2.5 1 23 1086 1108 1086 1108 0.98 12 13 0.00013 0.0079 16.8 4.2 1 23 1116 1138 1116 1138 0.99 13 13 9.3e-05 0.0057 17.3 0.5 1 23 1144 1167 1144 1167 0.97
Sequence Information
- Coding Sequence
- ATGATCAACACTTTGCTGGAGCATGTTCCCATTAAAATGGAAGTTAAAAATATGAATGAAGCTATAACTAATCCAGCAAATGATGAAATGGATACTGGATTGGCAAATGATGATGATAAAATTGATGAGACTGATGGGGAAATTGAAGATGACAATGATGTTGATGCAGAAGAGGAAGAGGAGGAAGATGAAGAAGAATCAGATATTGAAAGTGATGCCTTGGAAATTGAACAAGAGGCAATAATGTTAATAAGTAGTGATGAAGAAGCTGAATTGGAAGCGCAAAGAATACGTTTTCCTGAAATTGTTGCTACGAAGAAATTATGTAAAGATTCTAATAAGTCATCACGTAGTTCATCCAGAAGTAGCCAAACCAGTAATACGAATTCAACGTATAATCCACAAATTACTTACGAAATTGTACATGTAAGAAACAACTGTAACAAGGAGGAAACAGACAAGAAACAAAGAATTTCACCTCTTCTTAACAATACAGAGCACAATAACATTATCGAGAACTTGCATAAAGAGCATAACAATAATACACAAACGTTTTTAAAACAAAAAACAGAGAACAACAAATTGGACAATAATAAAACAATAGAAAGTAATAAAAACAAAATAGACGATACAAGCAAACGTTTGGATAACAGTAAATTACAAACAGACAATCATAAAAATTCGGAAAATAGTTGTAATATAATTTCTCCACAGAAAAGTCGTCGTGGCAGTGCTAATTCCACCTGTAGTGTAGCTTCTACGGTGGTTTCTGATACTGCCGAAACAGAGTCTTGTGGAAACATTTATGTTTTTAATTTACAACAAAAACTTATATTTAATTGTGAATTTTGCGATTTAAAATATGGTGACTTGGAAAATTTTGGACGTCATCTTCATGAGGTTCATAAGCTTTTCAATTATGATGAAGATCCTGAAAAAGAAAATGCCCCACGTAACTTGCGCAAAAATAATCGCTTGCCTAATAATACACCAAAAACTACGGCAAGTGTAAAGAAAGAACCCTTGCAGTGTTTAGAATTAGTGGCTGAGCCACCTGTTGCTTTGCCGCCTTCAGTTTTGGCAGAACCCCTAGATTCGTGCGGTAATGTTTTTGTGCTTAATCATCGTAAATTGTTTCTAGTTTGTGGCTATTGCGAATGCAAATATGCTAATTTGGAATTGTTTGAAAAACATTTACGGCAACAGCATCGGGTTTTCGAGGGTTATCGCAATGAGGTGAACGTGGTGCCGAAAAAAGAAATTAAAGAAGAAAGCGATTTAGTTCTTGCGGTAGTAGCAGCAACGCCTGACATAGTAATAGCTGCCCAAGCAATGGTGGCCATACCCGCCGATATTCCTTTAGATATAAGTATTTCATCGGAAAATGAGGCGGAAATGAGTGCTGATTTAGAGGAACCAAAAGAAACTAATGAAGAAGTGGTCACAGAATTGCCCACAACATCTATAATACCAGCTCCTATTCTTATTACTTTAGAAAGTGAGCCTCTTACTGAAGATAAAAATCTCGCCAAAAACAGTGAAATAAAAGAAAAAGAAAATATAAGTGAAATTGAAAATAATGAACCTGCAGTTCTTAAGAAAAGAAGAAGTAAAAAGCGGCCTTCATCTGAAATGTTAAACCTGTCTCCTAGTAAAAGATCTAAAAGAACTACAAGAAATACTACAAAAGCTGAAAGAGAGAAACAGAAAGAGTTATCTTCACAGATTGCCACTAAAAATGTAGAGGAAAAAGAACATGAAAAAGCTGCAGAACTTGTACCAATCAAAGACAGTGAATTAATTCGTGAAAAATTTTCTGTAAAAGAAATTAAAGTTATTGAAAATTCTGCTAAAATTACAGAAACACTGAAAAACACAGTGCCAGCCGTCTCCACTGAAAACTCTGAAGAAACTGAACGACCTACAAGAACAACAGATACCGAAATAAAAACACCCTTAAAAACAACTGAACCTTGTAAAATTACATCAAAAAAATTAACTAAACCAAAAAAATCAAAAGGTAAACGTACCAAGAGAAGTAGAAAAACAAAAACAAAAACAGCAAAAGTCACAAAACAATCCAAGAAAAATGCAACAGCTACAGAAAAAGTAACAACTAGAAAAGCAATGAAAAATTCTTTACAAATGAATTTGGAAGTTAAAAAGAGTGTTAAACAAGAAAAACCAGAAATAGAAGAGAAAGAAACAGTGGAAATTAAATTAGAATGTTCTATGTGCTCTAAAGAATTTGCACGTAAGGATACCTTGAAGATACATGAACGCACACATACTGGCGAAAGACCGTACGAGTGTGATATTTGTCACAAAACTTTCTCGGCCAGAGCAAATCTTTATATGCACAAAAAGTTTCACTTGGGTGAATCTTTCAAGAAATTTAAATGTGATGTTTGTGATAAGAAGTTTTTCCGCAACACTGATCTTAGAGTGCATATGTGTGGCCATGCCAAAGAGAAATATTTTAAATGTGGCGTTTGTATGCGTGGTTACGCTTCAAAGGTTAATGTTAAAAAGCATTTTGAAAAAGCTCATCAAGACCTCAAGAAAAAGAAAACAAAAGTGGAAGAAGAAATACTGCCTACACCTACAGAATTACTGCCCATTATCGGTGCACCTATAAGTGAACCAGCACCAGAGAAACCACTTCCCCAAAATGACAATGCCCTGAATGACTTAACTGCAGACCCTGTTCAGGATATTATTGAACAACTACAAAATGAAATGGCCGTAAATCAAGCGGAAAGAAGCACAGTAACCTTTACCATAACTACAGTAGCGGGCACTGAAGTTAATAATCTACAAAAGTCACCAGAGATAGGAGCGATTATTATGGCGCCTCCACCCAATGAAATAGACACCACAGGCGATGTTAAGCCAAACTTTATAAAAATTGGTAAACGTTTCTTCTGTGATACATGTCCCAGATCATTCGAAAAGCCCATACGCTTAGTCGAACATAAACGTTTGCATACGGGCGAGAAACCATTTTCTTGTGATGAGTGCGGTAAACAGTTTCGTTTACGCATGCGCTTAAATGAACATAAACTACGACATTCCAAAGAAAAGAAATTCAAGTGTGAAATCTGTCAGTTGGCATGTTCCACCAAACAATGCCTAAATTTGCATATGCGTCATCATACTAACGATCGCCGTTACAAGTGCAGCATATGTCCCAAGGCGTTTGTGCGCAGCTCTGATTTAAAAATCCATGTACGTGTGCATACTGGGGAAAAGCCATACGTATGCGATATATGTAGCAAATGCTTCCGGGCCAATCAAAATCTAAGTGTGCACAGAAAGTCTCACATGGGAGAAGCTTCAAAAACCTATAAATGTGAACACTGCGAGAAGAAATTTATGCGCAATATTGATCGCAAAGTACACATGAGAACTCATACTGGTGAGAAACCCTACAAATGTGAGATTTGTCAGCGTGGCTACTCTTCCAAATTCAATGTTCGGGCCCACATTGAAAGGGATCACATATCGGCAAGTGGTGTCGATCCAACGCCAAAAGGTAGAAAGAAACCAGGGCCAAAACCAGGTGCATTAAAAGAAGAGCTAGCAAAACAAAAGAAGCTCATACAGGAATTGCAAGACCAGTTACTGCAACAAATTAAAACTGATGAACAAGTCATACCGTCTGAAGAAGAAAAAATACAAGCAGATACATTACCAGACTCCAGCATAAAAACCACCTCCACTCTTAACGCTAACAGCAGCAGCAGGAAAGTGGACCCTATACAAAGTGCTTATGAATTGCTAAACAAACTGAAATCATCAACTACCTCTAAACCCTTAACCAAAATAGCATCACCACCACTTTTAGACGAACCGTCCTCTGATCCCTTTATCAAAGCCAACAGCAACAACACAAAAGATTCAACAAAAGCAACAGGTTTACTACCTCTCACTATAACACAAAAACTAGAGCAACCCTCTGTAGCACCTTCATCCTTAGCAACAAATAACACAGCCTGTATTACTACAACTGCTGCACCAACAGCCACCAACAAGACCACAGCTACAAAAGTAGTTTCACAGAAGACCTCATTGGGTATACAACAGGTATCGGTGACAGTGTCCATGCAAGTTGAAAATGTTACTGCGAATCCTACTACCCCAGTAAAAGAAAATGCTGACGTTTTAACTAACACCTCCTCTTCTAGTGGTGCTGCTGTTATTAAAAAGGAACGAAAAATTACAAGTTATTTTACTGTAGTTAGTCCAAAAACGGGTGTTTAA
- Protein Sequence
- MINTLLEHVPIKMEVKNMNEAITNPANDEMDTGLANDDDKIDETDGEIEDDNDVDAEEEEEEDEEESDIESDALEIEQEAIMLISSDEEAELEAQRIRFPEIVATKKLCKDSNKSSRSSSRSSQTSNTNSTYNPQITYEIVHVRNNCNKEETDKKQRISPLLNNTEHNNIIENLHKEHNNNTQTFLKQKTENNKLDNNKTIESNKNKIDDTSKRLDNSKLQTDNHKNSENSCNIISPQKSRRGSANSTCSVASTVVSDTAETESCGNIYVFNLQQKLIFNCEFCDLKYGDLENFGRHLHEVHKLFNYDEDPEKENAPRNLRKNNRLPNNTPKTTASVKKEPLQCLELVAEPPVALPPSVLAEPLDSCGNVFVLNHRKLFLVCGYCECKYANLELFEKHLRQQHRVFEGYRNEVNVVPKKEIKEESDLVLAVVAATPDIVIAAQAMVAIPADIPLDISISSENEAEMSADLEEPKETNEEVVTELPTTSIIPAPILITLESEPLTEDKNLAKNSEIKEKENISEIENNEPAVLKKRRSKKRPSSEMLNLSPSKRSKRTTRNTTKAEREKQKELSSQIATKNVEEKEHEKAAELVPIKDSELIREKFSVKEIKVIENSAKITETLKNTVPAVSTENSEETERPTRTTDTEIKTPLKTTEPCKITSKKLTKPKKSKGKRTKRSRKTKTKTAKVTKQSKKNATATEKVTTRKAMKNSLQMNLEVKKSVKQEKPEIEEKETVEIKLECSMCSKEFARKDTLKIHERTHTGERPYECDICHKTFSARANLYMHKKFHLGESFKKFKCDVCDKKFFRNTDLRVHMCGHAKEKYFKCGVCMRGYASKVNVKKHFEKAHQDLKKKKTKVEEEILPTPTELLPIIGAPISEPAPEKPLPQNDNALNDLTADPVQDIIEQLQNEMAVNQAERSTVTFTITTVAGTEVNNLQKSPEIGAIIMAPPPNEIDTTGDVKPNFIKIGKRFFCDTCPRSFEKPIRLVEHKRLHTGEKPFSCDECGKQFRLRMRLNEHKLRHSKEKKFKCEICQLACSTKQCLNLHMRHHTNDRRYKCSICPKAFVRSSDLKIHVRVHTGEKPYVCDICSKCFRANQNLSVHRKSHMGEASKTYKCEHCEKKFMRNIDRKVHMRTHTGEKPYKCEICQRGYSSKFNVRAHIERDHISASGVDPTPKGRKKPGPKPGALKEELAKQKKLIQELQDQLLQQIKTDEQVIPSEEEKIQADTLPDSSIKTTSTLNANSSSRKVDPIQSAYELLNKLKSSTTSKPLTKIASPPLLDEPSSDPFIKANSNNTKDSTKATGLLPLTITQKLEQPSVAPSSLATNNTACITTTAAPTATNKTTATKVVSQKTSLGIQQVSVTVSMQVENVTANPTTPVKENADVLTNTSSSSGAAVIKKERKITSYFTVVSPKTGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -