Tsol017029.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- -
- Assembly
- GCA_947397855.1
- Location
- OX377612.1:4004834-4006736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00011 0.0067 17.0 0.8 3 23 218 238 217 238 0.97 2 11 5.9e-05 0.0036 17.9 2.2 1 23 244 267 244 267 0.97 3 11 7e-05 0.0043 17.7 0.1 1 23 279 301 279 301 0.98 4 11 0.00018 0.011 16.4 3.9 1 23 306 328 306 328 0.98 5 11 6.2e-07 3.8e-05 24.1 1.6 1 23 334 356 334 356 0.99 6 11 0.00031 0.019 15.6 2.4 1 23 362 384 362 384 0.95 7 11 0.00018 0.011 16.3 3.1 1 23 389 411 389 411 0.97 8 11 2.1e-05 0.0013 19.3 1.3 1 23 417 439 417 439 0.96 9 11 0.00012 0.0074 16.9 3.8 1 23 445 467 445 467 0.98 10 11 0.00029 0.018 15.7 0.6 1 23 473 495 473 495 0.97 11 11 0.0014 0.086 13.6 2.6 1 23 501 523 501 523 0.97
Sequence Information
- Coding Sequence
- ATGACTACAATTCTGTTGGGCCGTATATGTCGCACCTGTTTAAAAAAGACCGCCAACATGCATAAATTACGAGATTTCATTAAAGATGGTTTACAAATTGAGGGTATGCTAAATCAAACTATACCAAATTTTGATCTGGAAATGGATGATATCCCTTTACCCGTGGAAATCTGTAAAGAGTGTCTGAATAAACTGCTAACATCATATGAGTTTGTCCAAATGTGTCTAAAAAGTAATAAGGATCTAAAAAATATTTTAAATCAACAAGAGCAAGAAATTGAAGGTTCCCTTATAACTGGCACATTAGATGCTAATCCAATGGAAATTTTAGAAGACACTGATATCTTAATGGATGATTTCAAAACAGAACCACTTTACGAAAGTTCGTGTGGCAGTAATGGACTTGCTGATTGCGATGAAACCACAAGTTTAAGTCCTAAGAAAGAAGATGTTAAACTTGAAATTGAAATTCAGCAAGTAAATCGCAGCGAGCACAATAGCAGCTCAGAAGAATATTGGCCTGGCGACGATAAGGATGATAGTGATAGCAATTTCTTTGAAAAAATGGTAAAAGAATCTTTAGATACGAAACCTAAAAGAAAATATGACAGAAAAGTGTCGTCATCTACACAGCGAGTTAGCACAAAAATTTGCCTACATTGCAATAAGGTTTTTGCCAAAAAAGATCTTTTAGTACAGCATTTGTCTGTTCATGACTCGGAACATCAATTTGTTTGTAAAATTTGTAATTACCGTTTTTCCAGCGAAAGAAAACTAAAAATCCATCTAAGTCGCAAACATAAAGGAGTAAAACAAAGCGTAAGTGGCGATGTATTTCCCTGTCCTGATTGCCCTATGATATTTCAACAAAGTCAAGATTTGGAAACACATCGTAGTATGCACCCCCAAAAAGAGTTCAAATGTCATCTGTGTGACAAATGTTTTCAAGTGGAAAATCAGTTAAATGATCATATTAACGAGCATATGGGCTATAAGAAATATAAATGTGATTTTTGTGAGAAAAGTTTTTCAAATAATACATCACTAAAAGATCATGTTCGTGTACATACTGGTGAATCTCCATTTTTATGCTCTCATTGTGGCAAATCTTTCAAAACTGCTAACATTTTACGTCAACATGCACAAAGACATGGCGAGAAAAAATTCCATTGCCCTGAATGTCCCATGAAATTTCATGTTAAAGTTAATTTAACTCAACATATGACTTCCCACAGTAAACTGAAACCGCATGTTTGCGATATATGTGGATCAGCTTTCACCAGACAAGATTCTTTAAAGGCACATAAATTTAAACATTCTGGAGAACGACCGTTTAAATGTGAAGAATGCAATATGAGCTTTGTTTTCAAACGGCACTTAGACCGACATAAAATCACTCATACTGGTGAGAAACCTCATATGTGCTCTTTTTGCGATCGAGCTTATGCTGCAAGTGGAGATTTAGTTAAACATTTGAGAAGACATGTAGGTGAAAAAACCTACTTTTGTGATCAGTGTCCTGAAGCGTTTAAATATTCACTGGATCTTAAACATCATAAAAATCAGCATTATAAAGAAAAACTAAATTTAGAACAAAAAAATTTAATTAATGTAGAAATGCCAAATGAAGACATTGATGTGCATACAGATGTTGATATGAACACCGAAGATACTGTTGTTACTTTAGAAGAATTGTATGATGTTGAAAAGAATTGTGAATAA
- Protein Sequence
- MTTILLGRICRTCLKKTANMHKLRDFIKDGLQIEGMLNQTIPNFDLEMDDIPLPVEICKECLNKLLTSYEFVQMCLKSNKDLKNILNQQEQEIEGSLITGTLDANPMEILEDTDILMDDFKTEPLYESSCGSNGLADCDETTSLSPKKEDVKLEIEIQQVNRSEHNSSSEEYWPGDDKDDSDSNFFEKMVKESLDTKPKRKYDRKVSSSTQRVSTKICLHCNKVFAKKDLLVQHLSVHDSEHQFVCKICNYRFSSERKLKIHLSRKHKGVKQSVSGDVFPCPDCPMIFQQSQDLETHRSMHPQKEFKCHLCDKCFQVENQLNDHINEHMGYKKYKCDFCEKSFSNNTSLKDHVRVHTGESPFLCSHCGKSFKTANILRQHAQRHGEKKFHCPECPMKFHVKVNLTQHMTSHSKLKPHVCDICGSAFTRQDSLKAHKFKHSGERPFKCEECNMSFVFKRHLDRHKITHTGEKPHMCSFCDRAYAASGDLVKHLRRHVGEKTYFCDQCPEAFKYSLDLKHHKNQHYKEKLNLEQKNLINVEMPNEDIDVHTDVDMNTEDTVVTLEELYDVEKNCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01427631;
- 90% Identity
- -
- 80% Identity
- -