Tsol018901.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- -
- Assembly
- GCA_947397855.1
- Location
- OX377612.1:51550462-51555486[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00012 0.0076 16.9 2.2 1 23 224 247 224 247 0.97 2 23 0.12 7.2 7.5 4.9 1 23 253 276 253 276 0.97 3 23 0.00022 0.014 16.1 0.9 2 23 307 328 306 328 0.97 4 23 5.7e-06 0.00035 21.1 0.5 1 23 405 428 405 428 0.96 5 23 2.8 1.7e+02 3.2 1.1 3 23 437 457 435 457 0.91 6 23 0.036 2.2 9.1 0.6 2 21 466 485 465 486 0.92 7 23 0.13 7.8 7.4 1.9 2 20 515 533 514 536 0.94 8 23 4.9e-05 0.003 18.2 2.2 1 23 615 638 615 638 0.98 9 23 0.13 7.8 7.4 2.9 1 22 646 667 646 667 0.95 10 23 0.22 13 6.6 0.8 2 23 679 701 678 701 0.94 11 23 0.068 4.1 8.3 7.2 3 23 722 742 720 742 0.94 12 23 0.045 2.8 8.8 0.3 2 19 769 786 768 788 0.95 13 23 0.0023 0.14 12.9 5.4 1 23 844 867 844 867 0.97 14 23 0.74 45 5.0 1.0 1 23 904 927 904 927 0.89 15 23 0.039 2.4 9.0 0.2 2 23 1005 1026 1004 1026 0.96 16 23 1.4e-05 0.00088 19.8 2.1 1 23 1032 1054 1032 1054 0.98 17 23 2.5e-07 1.5e-05 25.4 2.3 1 23 1060 1082 1060 1082 0.99 18 23 3.9e-05 0.0024 18.5 2.9 1 19 1088 1106 1088 1112 0.95 19 23 0.001 0.062 14.0 0.1 3 23 1138 1158 1137 1158 0.99 20 23 4.2e-07 2.6e-05 24.7 2.5 1 23 1164 1186 1164 1186 0.98 21 23 5.6e-06 0.00034 21.1 1.3 1 23 1192 1214 1192 1214 0.99 22 23 0.00089 0.054 14.2 5.3 1 23 1220 1242 1220 1242 0.98 23 23 0.36 22 6.0 3.0 1 19 1248 1266 1248 1267 0.97
Sequence Information
- Coding Sequence
- ATGAACAATAGTGCTAAGAAGGACTGCCTTATCAATGGAGTTCTGTACAAGTGTCGTACCTGCTTTGACCCAGGAGAAACGTTCTACTTCCTTGAAGATGATTGTAGTGATTCAAGAACTTGGCGTGACTTATTTAATTATGTTGCAGAATTAAAGATAAATGATGACGACTTGCTCCCAAATACTGTTTGTTGCAAATGTTTGGATAAAGTTATAAGCTTTTACGATTTTATACTTCATATTAAAAATGTAAACAACAGATATATGCAATTATTGACAAATGGTTATGGTTCTGTGCAGGATGGAGCATTGACCGTATTTGACAAGTTTACTGATTGCTTGGCTGAATCCGCTATTGCTTTGCCGATGGCTCAATTTGTATCGGAAATCAAGTTTGAAGGGGAACCGGTGGCTTCCTACGATATCATTCAAAATGACATGAAAGGAGAAGATAGTACAGAAAAAGACACTTGTGATCCATTTAAAGAAACTTTTAATCAGGATATAAATTTACCTTTAACAGAGTTACACGATGAACTAAGCTCCTCTAATGAAAATAATGATTTGGACGAAAAAACAGAAAAAAAATATAAAATGGCCAGGAGTCAAAAATCCGGAGAGAAATATACCACCACAGATTATTTTCAAATCGAACAAGTTGACTATCGTTTCGTATGTCCAATATGCAAGAAATCATTTTCTTTGCAAAGGAATTGCCGACGACATATAATTACAATACACGGTCAGAAAAACAAATTTATTTGTGGATTTTGTGGACTACATTGTAGCTGCAAGGAGAATTTGATGGCCCACATCAGACGTATGCATCCTGGCAAATCATTTAATCCGAATTTGAAAAAATTGGTTTTACTATATGGACATCGCTTATATAGCAAACCTGTTCCTTGGATTTTTGTTGAATGTAAATTGTGTGATACTTCTTTTGGAACAACAAAAGAACTTCGTCAACACTTACAAAAGCATAGTGATCTTAAAACTCTTGAAAGTTTAAACATTAACAGCAGAATTGTTAAGCAATGGTTTTCAGATACTATCGATTTGAACGTTATCAAGAAAAAAATATGCAACGAAATTCGTGAAAATGATTGGTTTAAATATTACACAGTATTAAACGAAAATTCCTTTGAAATGTCTGTTAGTGATACAGATGCAGAAGAGTTAGAGGACAAAGCTGTAGATCGTATCGGCAAATACAAATGTGAATTATGTGGCAAAGCATTTTCATATAAATACGAAGTGTTTGCTCATATGAAAGACGATCATTATAAGGATGATATTGCTTTGAAATGTATTCGTTGTAAGTTGGAATTCATATCATTAAAGATGTATGAAAGCCATAAACAAACCCATTGCCGAAATAAACATAAAAATTTACCCTGCTCTTATTGTCCGGGGAAATTTGTGAACATCGAAAATTTGAATAATCACCATTGCATCCAAACTAGCCCAGATGATTCCAAAGCTCTAAAACGTTTAGTAAGAGCTAAAGATAACAAGATATTATCATCAAAAATTATAATTCGATGTTGTCTTTGCGAAATGGTATTTGAAAAGCTTCGAGATTTACGCCATCATATGCCATTACATGAAGATGGTAAAACTGGAATTGACTTTAAAAATTGCATGTATGTAAAGCAATTTTTAAACGCTGATTCTATTGACTTTGGAATGCTGCAGCAACAAATAAAAGAGGCATTTATTAAACGCCAAATTAGTTATTTTTATCAAGCCATCGATAAACATGGTAATGAAATGGATATTTCAGATTCGGATTCGGATAGCTCTACAGAGAATGTTGTAACTAAAAATGAAAGAAAGATTTACACGTGTGACCTTTGTAAAGAAATATTCAGAAGACGAAAACTTTTATTAAACCATCAACGAAAGCAGCATTCTGAAAATGATCAAATGCCACATACATGCGAGCATTGCAGTCAGCAATACATTAGCATCCATTTGCTGCAACAGCACTTGAAAAGGGAATGCTGGAATGAACAACGCCGAATAGCTACAAAGTGCGATCAATGTAATGCACGTTTTATATGGAAAAGTAATATGTTAAAACATAAAGAAATTCAGCATCAAAGCTTAGGGAGGAGTATAAAAAGGCAAGGTTCTTACTCCGGTGTTCAGCTTCGTTGCTGTTTCTTATGCCCGAAAACATTTTTTAGCACTAAACAGCTAAACCACCACTTAAGTCGGCATCAGTTGAACCCATCCGCTATTAAAACAGTTGAAAGTATAGTGCATTCCACATGGTGGCCAAATGGTAGAAAAATAATAAAATGCAAAGTATGTGATCTTGAATTTAGAAGCATGGCGAAATTGAGAGAACATTTTTTTTGTAAAGACACTGAACCATGCTGTGGAAAACAGCATTCGCTGGTTAATTACTCAATTGTTAATCAAAAAGGCTTTGAACTACATTTAGAACTGGATTCTGAAACAGATGATGAAGAGAGTGCAGAAACTAAAAATAATGACAGAAATATAAAATCTTTACTTCCATATGATTGTTGCATGTGCAGCAGGTCGTTTAAGAGGAAATATCAAATTTCTCAGCATCAACGGTCTATGCACAATTACGAAATGTTGGAGCTCAAATGCGAACGTTGTTTTTATAGGACTGTCTCACAGaaagtcttggattatcatagaaatacccaatgtttcaataatgaaaagaaatacaaatgtgatcaatgtaattttaaattcatgtgggaaaataatctggataatcatgttgcaaagtttcatattacaaaaggttttgaaaaaagtatggatgtCTTATCAATGGAAATTTCTAGTCAGGGTATTGAGTCAGAAAATGATTCACAGTCAATATCTGATGAAAATATTGTAAACTTGAATAGTTGCAACCAATCCACACCAAATAGAACAAAATGCAAAAATGTTTCAGGCAACATTTGTGGAATGCCCACAAGTTCATCAAATCTTCGAGAAAACGAAGTAgagaaattcttaaaatgcaatttttgcgaaatggcatttctgtcgacagccgatctaaaggaacacatacgtgcacacagtggcgaacgtccgttcaaatgtgtcatatgcaacaaatcatttaagcggcaatacaaactaagtattcataaactcgtacacactggcgaacgaccttttcaatgtaaaatttgtaagaaatcatttaataatcctgactatttgaaactacatcaacgcagtcacgcggctgcaaatccttacaagtgtaacatttgtcagaaaagttttataactgcatcatatctaaaaaaacattgcaaactgttagggcataatggtttacgctcaacaccagataatactatttccagtagcccccagcaacctacgccagatgaaaggaacttatgtcccatatgcggtgtttatttgtccggtaatacaagtctaaccaaccacatgaggagccataccggtgaaaaaccgcacaagtgtgacctttgcgaaaaggcttttgccagaaagtctaatctccagattcatagacgcacacacttcactgatcggccatttaagtgtacgtcctgtgaaaaatcgtttgttagtcagaccaagttaaatgctcacttgcgaattcatactggcgaacgcccttatcagtgcacgatttgtcagaaaaaattcaacagaacgtgttatttgaaactacatttgcttaatcacaagggcgaaaaaccctttagatgtgagatttgcgatcaagcatttatatgtagtgcatatcttaaaaaacattgCGTCAAGCAAGGGCACTTCATAGATAAAAATTGA
- Protein Sequence
- MNNSAKKDCLINGVLYKCRTCFDPGETFYFLEDDCSDSRTWRDLFNYVAELKINDDDLLPNTVCCKCLDKVISFYDFILHIKNVNNRYMQLLTNGYGSVQDGALTVFDKFTDCLAESAIALPMAQFVSEIKFEGEPVASYDIIQNDMKGEDSTEKDTCDPFKETFNQDINLPLTELHDELSSSNENNDLDEKTEKKYKMARSQKSGEKYTTTDYFQIEQVDYRFVCPICKKSFSLQRNCRRHIITIHGQKNKFICGFCGLHCSCKENLMAHIRRMHPGKSFNPNLKKLVLLYGHRLYSKPVPWIFVECKLCDTSFGTTKELRQHLQKHSDLKTLESLNINSRIVKQWFSDTIDLNVIKKKICNEIRENDWFKYYTVLNENSFEMSVSDTDAEELEDKAVDRIGKYKCELCGKAFSYKYEVFAHMKDDHYKDDIALKCIRCKLEFISLKMYESHKQTHCRNKHKNLPCSYCPGKFVNIENLNNHHCIQTSPDDSKALKRLVRAKDNKILSSKIIIRCCLCEMVFEKLRDLRHHMPLHEDGKTGIDFKNCMYVKQFLNADSIDFGMLQQQIKEAFIKRQISYFYQAIDKHGNEMDISDSDSDSSTENVVTKNERKIYTCDLCKEIFRRRKLLLNHQRKQHSENDQMPHTCEHCSQQYISIHLLQQHLKRECWNEQRRIATKCDQCNARFIWKSNMLKHKEIQHQSLGRSIKRQGSYSGVQLRCCFLCPKTFFSTKQLNHHLSRHQLNPSAIKTVESIVHSTWWPNGRKIIKCKVCDLEFRSMAKLREHFFCKDTEPCCGKQHSLVNYSIVNQKGFELHLELDSETDDEESAETKNNDRNIKSLLPYDCCMCSRSFKRKYQISQHQRSMHNYEMLELKCERCFYRTVSQKVLDYHRNTQCFNNEKKYKCDQCNFKFMWENNLDNHVAKFHITKGFEKSMDVLSMEISSQGIESENDSQSISDENIVNLNSCNQSTPNRTKCKNVSGNICGMPTSSSNLRENEVEKFLKCNFCEMAFLSTADLKEHIRAHSGERPFKCVICNKSFKRQYKLSIHKLVHTGERPFQCKICKKSFNNPDYLKLHQRSHAAANPYKCNICQKSFITASYLKKHCKLLGHNGLRSTPDNTISSSPQQPTPDERNLCPICGVYLSGNTSLTNHMRSHTGEKPHKCDLCEKAFARKSNLQIHRRTHFTDRPFKCTSCEKSFVSQTKLNAHLRIHTGERPYQCTICQKKFNRTCYLKLHLLNHKGEKPFRCEICDQAFICSAYLKKHCVKQGHFIDKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -