Tsol019122.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- Zfp42
- Assembly
- GCA_947397855.1
- Location
- OX377612.1:56354221-56362827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.09 13.5 2.7 1 23 238 260 238 260 0.98 2 18 1.8e-06 0.00011 22.6 2.8 1 23 270 292 270 292 0.99 3 18 3.2e-05 0.0019 18.7 0.9 1 23 298 320 298 320 0.93 4 18 4.8e-05 0.0029 18.2 0.1 1 23 326 348 326 348 0.96 5 18 0.00026 0.016 15.9 1.4 1 23 355 377 355 377 0.96 6 18 0.00039 0.024 15.3 3.4 1 23 460 482 460 482 0.98 7 18 0.0034 0.21 12.4 0.1 3 23 491 511 490 511 0.97 8 18 0.00064 0.039 14.6 0.2 1 23 517 539 517 539 0.93 9 18 2.5e-06 0.00015 22.2 0.9 1 23 545 567 545 567 0.97 10 18 0.0018 0.11 13.2 3.6 1 23 574 596 574 596 0.96 11 18 0.0017 0.1 13.3 1.8 1 23 674 696 674 696 0.97 12 18 8.7e-05 0.0053 17.4 0.3 1 23 706 728 706 728 0.98 13 18 1.2e-05 0.00073 20.1 1.5 1 23 734 756 734 756 0.93 14 18 1e-06 6.1e-05 23.5 0.1 1 23 762 784 762 784 0.97 15 18 0.00012 0.0073 16.9 1.1 1 23 791 813 791 813 0.96 16 18 6.1e-06 0.00037 21.0 1.0 1 23 819 841 819 841 0.98 17 18 2.5e-06 0.00015 22.2 3.5 1 23 847 869 847 869 0.99 18 18 1.3 81 4.2 0.3 1 23 875 897 875 897 0.80
Sequence Information
- Coding Sequence
- ATGTCTGAATCGTTTGAAAATATATGCCGAACGTGCATGTTGGATGAAACGAAGCTGGAAGAAATTAACAACAAAAATAATGTAAAAATTAAAATGACACAAATGGTCTCAATTTTTACTATCCAGGACGAAGCCAAAGAAAAACTAAATTTATCAGAATTAATCAAAGCCACTATACCACAGTTACAAATCAAAAAAAATGATCAGTTGCCGAAAATTATTTGCCTAGAATGTTCAGAAAAAATAAAAAATATATATAGTTTTCAACAAAACTGCATAAACACTGAAAAGAAATTTTATAAAATGTTAGCAGAGCAGAACAAAAGAACTCGGACGAATGACACTGAAGTGCAAGAAGATGTGGTCAAGACTGAGTTTAGTGCTTCTTTTATTGAGGAAAACTATTTACAATCTGAAGAAGACTTGATTATGGAAGAAGAAATAAATAGAGCTGCAGAGGCAACAGAAGAATTTTTAGAGGAAAGCTGCAGTGATTTAAGTTTAAATTTAGCTTGGGATGATAATAAAAGTGATATTGATTGGAATGAAAAGGAGATGCCAAGTAACTTGAAAAAAATTAAAAAATCCACTAACATAAAAACCAATAATAAACTGGTTGGTGATGATGAAAAAAGCGAAGATGATAATATATTTATAACGAGTACAACAAAACATTCTGCTATTACAAAAGAAATGATAACTAAAGGAATGTATCCGTGTAATAGATGCAAGAGAACGTTAAAAACAAAGATATCATTTTTGAAACACCAACAAATGCACGATAAAAGAGATAGTGATGGACGGATATATGAATGTAACATATGTAATAAAGTATTCCATTATAGTTCTCTACTAAGGGAACACCAACGGTCCCATATTGGCGATCGACCTTATCTGTGTTCTATATGTGGCAAAGGATTTACATCATCAGGTAGTTTAAAACAGCACTCATTCCGTCATTTAGAGCAAAAACAATTTCCCTGTCCTGATTGCCCGAGATCATTTCCCACGAAAACAGATATGCTTTCGCATTATGACATTCATAAGGCAAAGCCTAGAAATCATATTTGCGATGTTTGTGGTCGTGGATTTTACAAACCTTATTTGTTGAAACAACACAAAATGTATCACAACAATGAAAGACCATATGCCTGTGAATTTTGTGATAAACGTGAAACCAAAAATTTAAATCATACAAATAAAAAGCAGATTGCTGATGTTAGAACAAAAGCTGATCCATTTGAAACAACGAAAAGTATTAAGCCATGTAAACCCAAAGGAAAAAAGAAAAAGTTCATAAAGGATAAACAAAGTAAATCTAAGGAAAAAAAGAAAAATTTCTTAAAGGAAGAAAAAACCGAAGACCACCAAGAGTTTTATCCTTGTAATAAATGTAAAAGAAAGCTAAAATCGCAATATTCATTTAACAAGCATCAAGAAATGCACAATAATAAGCGAAAAATAAATATTTGTTCCATATGTAAAGAAGTATTTGCTGATACGTTAAAACTAAAGGAACATATGGTTATGCACACTGGGAAAAAAACATTTTTATGCTCGGAATGTGGCAAAGGATATACTACGGCCGGAGGTTTGAAAGAGCATTCATATCGCCACTTAAATGAAAAAAACTTTTCTTGTCCTGATTGTCCACGTTCCTTTACAACTAAAACCGATCTAGTATCGCATCATATAATTCACAAAGCGAAACCAAAAAATCACATCTGTGATATATGTGGACGTGGCTTCCACAAACCTTTTCTATTAAAAAAGCACAAAATGTATCACAATAATGATAGACCCTTCGTCTGTGAATTTTGTGAAAAACGAAATACTACAGTAGCGGATATTTCCACAATTCTTAAAAGAGAAGAATTTGACGATGAGGTATTCGAGTCATTCGTATATGATGATGATGAAGATGAAGATGTTAAAGATGATGACGATGATAATTATGATGAGGATCATGAAGAACTGAATTCAACAACATTAAATATACAAACTAATGTTGGACCAAGTTATCCCTGCGACAAATGTAAAAGGAAATTGAAATCAAAGCTATCCTTAAAAAAGCATCTAGAATTGCATGAAAAACGCGACAATGAAGAGCCAAAATTTGTTTGCAATATTTGTGATAAAGGCTTTTCACAAGGATACATACTTAAAGATCATCTACGTACACACAGCGGTGAAAGACCATATTTATGTTCAGAGTGTGGTAAATCATTTACATCATCAGGCAGTTTAAAACAACATTCGTTCCGTCATCTTAACAAAAAACAATTTCCCTGTCCAGACTGTCCTAAATCATTTCCAACTAAAACTGATTTGACTTCCCATTATGATGTTCATAAAGCAAGGCCTAGAACGCATATTTGCGACATTTGTGGTCGAGGTTTTCCGAAACCGTTTCTTTTGAAAAAGCATAAAATGTATCATACTAACGATCGACCATTTTCTTGCGAATATTGCGCCAAACGTTTTATTACCAATGAAAaactacaacgtcatgttagaattcatactggtgaaaaaccatataaatgcaactattgcgagaaggcctattgtcaatcaaatgaattaaccaaacatttgagagttcatttaggagataatgtatatcaatgtgggttgtgtcctttaagatttccaacagttaaaattgttcgagaacacttctctacgcataaaaacgatgatgaagaaacTAAAGTTCGCAATTTAGCAGAGCTAAATGCTATGACTTTAAAAGGAATTTATTGTAGATAA
- Protein Sequence
- MSESFENICRTCMLDETKLEEINNKNNVKIKMTQMVSIFTIQDEAKEKLNLSELIKATIPQLQIKKNDQLPKIICLECSEKIKNIYSFQQNCINTEKKFYKMLAEQNKRTRTNDTEVQEDVVKTEFSASFIEENYLQSEEDLIMEEEINRAAEATEEFLEESCSDLSLNLAWDDNKSDIDWNEKEMPSNLKKIKKSTNIKTNNKLVGDDEKSEDDNIFITSTTKHSAITKEMITKGMYPCNRCKRTLKTKISFLKHQQMHDKRDSDGRIYECNICNKVFHYSSLLREHQRSHIGDRPYLCSICGKGFTSSGSLKQHSFRHLEQKQFPCPDCPRSFPTKTDMLSHYDIHKAKPRNHICDVCGRGFYKPYLLKQHKMYHNNERPYACEFCDKRETKNLNHTNKKQIADVRTKADPFETTKSIKPCKPKGKKKKFIKDKQSKSKEKKKNFLKEEKTEDHQEFYPCNKCKRKLKSQYSFNKHQEMHNNKRKINICSICKEVFADTLKLKEHMVMHTGKKTFLCSECGKGYTTAGGLKEHSYRHLNEKNFSCPDCPRSFTTKTDLVSHHIIHKAKPKNHICDICGRGFHKPFLLKKHKMYHNNDRPFVCEFCEKRNTTVADISTILKREEFDDEVFESFVYDDDEDEDVKDDDDDNYDEDHEELNSTTLNIQTNVGPSYPCDKCKRKLKSKLSLKKHLELHEKRDNEEPKFVCNICDKGFSQGYILKDHLRTHSGERPYLCSECGKSFTSSGSLKQHSFRHLNKKQFPCPDCPKSFPTKTDLTSHYDVHKARPRTHICDICGRGFPKPFLLKKHKMYHTNDRPFSCEYCAKRFITNEKLQRHVRIHTGEKPYKCNYCEKAYCQSNELTKHLRVHLGDNVYQCGLCPLRFPTVKIVREHFSTHKNDDEETKVRNLAELNAMTLKGIYCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -