Basic Information

Gene Symbol
ct
Assembly
GCA_947397855.1
Location
OX377612.1:1667981-1715112[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 9.8e-27 6.9e-23 80.7 0.0 3 72 992 1062 990 1067 0.94
2 3 9e-32 6.3e-28 96.8 0.0 3 77 1421 1496 1419 1498 0.96
3 3 9.2e-31 6.4e-27 93.6 0.0 3 77 1675 1750 1673 1752 0.96

Sequence Information

Coding Sequence
ATGAGAAATCATGATGATGATGATGATTTTGCTAGAGCTACCTTGGCTGAAAAGGAAGTCAATACTCTGAAGGAACAACTATCCACCAGCTTACCCAATACAGACGGTGACAATAATAACGGTGACTTGAGCTTGTCCAGCAGCACAGCTAATAATACGCTGTTAACTAATAACGAAGTCTTAAACGCTTTGGCCTCAGAGATCCCACCAAATAAATTGCTTTCTTCTCCTACGTTTAATAACAACAATACGAAACTATTGAATAGTGTGGCAGCTGCTATAACTTTACACCAGAACGGTGGTAATTTATTGGCTACAACACCCTCCCCCTCACCACCTCTATCGGACTCGGGTAATAATATTTGTAGCTCCCAGGAGGACCAAACGGAACAGCAGCAACAATTGAACGGTTGCTTAAATCCCAAATTGTTTTTTAATCACGCGCAGCAAGTTATGATGATGGAGGCAGCTGCTGCTGCAGCGGCCGCCGCAGCTGCTGCCGCTGCAGTGCAACAACAGCAATCGCCCATGCATTCGCCACAACCTGCTGTGACACAGCAAAAGCAACAGCAACAAGAAGTTGTTGAAAAAGTAGATGCTTTATTAGCTAAACCCACCAATACAAAGGAAATCAAAGATAATTTAGATTCCAAATTACCAAGTGATACTCAAACACAGGATAACAATAACAGCCTTGCCACAACACACCATCAGGAGCAACAGCAACAGCAAGTAGCTGAAAATGCCGCTGACAGTGCTTGTAATAACAATAACAAAATCAATAGTTTTAATAGTGATAGTGACAACAAAAGTAGTAGCATAAATTCAATGATAACAAATCAAAAATGTACGGAAACGGAAAATGATAAAGATAAAACGGACAATACTATTGTTAATCTGGAAGAGGACATGGACACTGCGGAAAATGTTAGAGGGAATTTAATAGATAACAACAACTACACAACAAACAATGAAATCAAACAACACAATCATAACGAATTATTAGCTGCCAAAGACAAAGAGATTAAAGCCTTATTTGAGGAAGTAAAACGTTTGAGAAGCCTTGAACAAACCCATTTAATACAAATTCAACGTTTGGAAGAGCACTTGGAAGCCAAACGCCAGCATATTGTGCGTTTGGAATCAAAACTGGATAAACAGCAAATTAATGAAGCTTTTAAAGAATCCCAACAGCAGCAACAGCTAGAAAAGGGAGAGATACAAGAGCAGCAGGAGCCTGAAGTAGAGCAAGAGGATCTAACAAAAGACTGTGAAATGTTAGATGTTAATGAAGCCTCTGGGCCACATAATGAAGACAATGATGATAATGAAGTACAAGAGATTGTGCAAGATAGAAACTGTGATTTAACGCCACCACCACCACCCACACCATGTCTTAATGACAAACATCAGGAAAataattatgacgatgacgatgacgatgatgatgatgatgaagagcatattaaccaaaatgaaattaatcaaaattctacagatTTAGAAGTGTGTACAAGTACTAAAGCTGCTCTCAAAGATTTACAAATCAAAAAGGAAACACAATCACCTTTATCGTTAGACTCGATTAGCCAACAAAATGCCATTGCCGCAGCTGCTGCAGCTGCCGCTGCCTGCAATAACGATCCCAATAAATTCCAAGAATTATTAATGGAGCGCACTAAAGCTTTAGTGGCCGCTGAAGCTTTAAAGAACAGCGAAGAATCTAATAGAGTTAACGAAGAGCCGCAATGTTTAGATACAAATAAAAGCCCAAATGTTGCTGGCTCAAATAGCAATCATAAACAAGCCGATGTTGAGGAGCATGTTGACGCTTCAAAAGTGCCAAAAATTGAAATACTAGATGATGATGAAGATGAGGAAAATGCAAAAATGCATTTGGATACAAATGAAAATGCTGCAAAAGCTGCCACAACTGATGAATTAAGTGCCAGCATTGATTTGGAGGGCACAACTAATGCTACAAGCTTAGCAGCGGCAACATTAGATAATCAGTTAGATGCAGAAGATGAAGATTCGGTTACATTTAAACAAAATGTGGAACGTTTTGGCACTTTGTTGGGTGAAGAATTGGTAAATTcatattggcgtcgaggttttgatcatacaaaaacattgtatgcccaacaacaaagccaacagcagcagcagcatcaacagcaacatcttcagcaacaccagcagcaacaacgctccttgcagcagcaatcacaacatcatcaacagcagcaacaacaccatcatcagcatttaataatgcaacaggcaaatgcccaccatcatcatcatcaacagccaatacaacaccagcatcatcaccaacaacaacaacagcaacagcccacacaaacgcatttatcacaaccacCCTGTGGTCCCTCTTCGACCACCTTGCTTAGTCAATTAGTTAATTCTACCTTTTCTACTCCCAACTCTAATACTTCAACTCAATCCTCTTTACGTTCTGCAGATGGTTTTACACACACACAACCTGTTACGCATCATCATCATCACCCGCACCACCACCACCTGCACCATCAATTGCCTGCTCATCTAGCCGAACATCATGAGAAATCATCACTGAATCATCATGATTCATCGGCTTCCAGTGCCAGCACACCCAACCTGCAGGAAACTCGCAACAATGAGGATCATCACAGTTTATCCCTGAATGGTTCTCTTAAAAATTTAGAGGATAACAATAATAGTTTATGCGCTACACCCACCAGTCATCATATGGGCGCTGGCCATCCCTCACATTTGCCTCATGGCTTTTTACCTGGCCTACCATTCCAATTCCAAGAACGTGGACATTTTCGTTTTGCTGACGATTTACAATTACCTCCGGGCACCTCTATGGCCGGCCGTTTGGGTGAGTCTCTCATACCCAAAGGTGATCCCATGGAGGCCAAACTTCAGGAAATGTTACGTTACAATATGGATAAATATGCCAACCAGGCCTTGGACACGTTACATATCTCTAGGCGTGTGCGTGAATTGTTATCGGTACACAATATTGGCCAACGTATATTTGCCAAATACATATTAGGTCTATCGCAGGGCACCGTATCGGAGTTGCTGTCAAAACCCAAACCCTGGGATAAGCTAACAGAAAAGGGACGTGATAGTTATCGTAAAATGCATGCTTGGTCTTGTGATGATAATGCCGTATTGCTACTCAAATCTTTAATACCTAAAAAAGATTCTGGTTTGCCTCCTTATGGCAGTGGTGGTGGACGTGATGATTCAATGTCTGATGAGCGCATAGCTCACATACTAAATGAGGCTTCTTCGTTAATGAAATCAACAGGTCCCCCTTCGTTGCATCAACAGCATGAACATCAAAGGAGACCGTCCACCATACCGGAAGATTCTCGCAGCAATGATGATTCAAAATCACCCCATCCACCCTGTTCATCGCCCTTCTTTAAGGAACATCATAGTAAATCTCAGGGTGAAACCGTTATGCCCGGCCAAGGTCATATGCGTCCAGATGATATGAATCCTGAGAAAATGGCGAGATTGTATCAAGAGCTAATGGCTAGAGCTCCTCGTGAAACTTTTCCCGGATTTTTGCTTTCACCCTTTTTCAGTGGGGGTTTACCTACTGCGGCTGGCATGGGTGCCAACGCGTTTCCTGGCCTATCAACCGATGAAAATATGCGTTTAGCTTTTGAGCGAGAAATGTCAAAATTGCAGCAGCAGCAGCAGCAACATGCTGCTCAGCCGCCCAATTTTGCCAATTTCTCTAGTCTCATGGCTTTGCAGCAGCAAATGTTGAATGGCGCCCAGGATCTGACTCTAGGTACTGAGGATAAGCCCAAGGATAACAATAAAATTAACGGCCAGCGCAGCTCGTTTGAGGCGTCTCAAAACTCTCACAGCAATCATGGCCAGACAACGCCAAACGCCAAAGACTCCAGCTCCTCAGAAGTGGAGAGACTTTATCCGGGCATGGTAAAGTCAGAACAGGGTAATAAAACCCCCGCACCTTTAGCATCAAGTAATGCTTCTACCACCAACACCAATTCGGCTGCACCCAGCCCTCTCAGCAATTCCATACTCCCGCCTGCTCTGACAACAAATGAGGAATTCTCTGCCACCGCCAGCCCTCTGCAGCGAATGGCCTCCATCACCAATTCGTTGATCACACAACCGCCTGTACCACCTCATCATAACCCTCCTCAGAGACCCACAAAAGCCGTCTTGCCTCCCATTACCCAGCAACAATTTGACATGTTCAACAATCTCAACACTGAAGACATTGTGCGCCGGGTCAAAGAAGCTTTGTCACAATATTCCATATCCCAGCGTTTGTTTGGTGAATCCGTTTTGGGTTTGTCTCAAGGTTCCGTCTCTGATCTCTTGGCCAGACCTAAACCTTGGCACATGCTCACTCAAAAAGGCCGGGAGCCGTTTATACGCATGAAAATGTTTTTGGAAGATGAAAATGCCGTACACAAACTGGTGGCTTCTCAGTATAAAATTGCTCCCGAAAAGCTAATGCGCACCGGCAACTACAGTGGATCACCACAAATTCCTCAGGGCTTGGCTAATAAAATGCAGGCGTCGTTGCCCATGCAAAAAATGATGAGCGAACTGAAACTGCAAGAACCAGCTCACATCATGCAACAAATGCAAGCTGCTGCCGTAATGTCAGCAGCCATGCAGCAACACCAGCAGCAGCAAGTCGCAGCCGCCCAACAAAGTCAACAGCAAGCTGCTCAGGCCGCTGTTCAAGCTGCTCAGGCTGCAGCTGCAGCCCAGGCGGCTCAACAACATCATCAAAATATGCTTTTGACTTCCCCAGGCCTGCCACCACAACACACAATTGCATTGCCTGCAGCCAACTCTCAACCAACATCAGGCAATAGCACACCAGCTGGACCCACACCCGATAAGAAGCCAATGATGATGCCCATACACTCACCTCACCAAGGCAATGCCATGCGCAATATGCACCAGCATATGTCACCCACCGTTTACGAAATGGCAGCTTTAACACAAGATTTAGACACGCAGGTCATCACCACCAAAATCAAGGAAGCCCTGCTGACCAACAACATTGGCCAGAAGATATTTGGAGAAGCTGTTTTGGGCTTATCACAAGGTTCAGTGTCAGAACTGCTTAGCAAACCTAAACCCTGGCATATGCTGTCGATTAAAGGACGAGAGCCCTTCATACGTATGCAGCTGTGGCTGTCGGATGCCAACAATGTGGAACGCTTACAGGTTTTGAAAAATGAGCGGCGAGAGGCTTCAAAACGCCGCCGTTCCACAGGACCTAACCAACAAGACAACAGCTCTGATACTTCAAGTAATGACACTAATGATTTCTACACTAGCAGCCCTGGACCGGGTTCGGTAGGCAGCGCTGGAGCTCCGCCAAATAAAAAGCAGCGCGTGCTGTTCTCCGAAGAGCAAAAAGAAGCTTTAAGACTGGCATTTGCCTTAGATCCTTATCCCAATGTGGGAACTATAGAATTTTTGGCAAATGAATTGGGCTTAGCAACGCGTACTATCACCAACTGGTTCCACAATCATCGTATGCGTTTGAAACAACAAGTGCCTCACGGTCCACCCGGTCAAGAAACCAATATACCCACTAGAGAAAACACCAATTCCACACCCTTCGATCCCGTCCAGTTCCGCATTTTACTACAGCAAAGATTAATGGAATTGCAGAAGGAGCGCCTGGGTCTGGGGCCCAATACACCCTTGCCCTATCCACCATACTTTGCAGCAGCCGCACTCTTGGGACGCTCGTTAGCAGGCATGCCAGGCACCAATGCCCAAACCCCTGTGCCCACCACTGAGGCCGAATTAAGAGCCCTAAATCAGGCTTTCCGAGAGCAAATGTCTGGCCTAGACTTATCCATGAGCTCTTTGAAACGTGAACGCACTGATGACTTTGAAGATGACATGGACGAAAGTCATATGTCGGAAAATGAAAACGATGATTTAGATGACGAAGACAAAACCAGCGATTACAGAAGTGCAGCATTGACCAGCATGAATGCCCAACAGTTCTTAAACAACATGCGTTCAAATAGAAGAAAACCCGCCGCACCACAATGGGTTAACCCGGCCGTGCCAAACGCCAGCGAAGCTGAACGCATCATCAACGGTGTATGTGTTATGCAGACCGATACTGAAGGTCAACAACAAACTGCCAATGACGAAGATTTACACAAATCTCACGATCATAACGACGACAATGATCTAATGGAGGCACCCCATCAGTCAGTTATGGAACCTGAAGTGGTAATCAAACAAGAAAAAGAAGACTGTGAAAGTGATGGTGAAAAGACAAACACCGATGATGCGCCAGCCATGACTGAGGAAAGAATTAAGGTTGTGCAGGAAGATAAACTGCGAATGGTGCGTGTTAATCGTTTAAGCAACGAAGATGAAACAATAGCAACAGCTGCACCTAATGCACCAGCAACGGCGTCATGGAATTATTAA
Protein Sequence
MRNHDDDDDFARATLAEKEVNTLKEQLSTSLPNTDGDNNNGDLSLSSSTANNTLLTNNEVLNALASEIPPNKLLSSPTFNNNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDSGNNICSSQEDQTEQQQQLNGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQQQQSPMHSPQPAVTQQKQQQQEVVEKVDALLAKPTNTKEIKDNLDSKLPSDTQTQDNNNSLATTHHQEQQQQQVAENAADSACNNNNKINSFNSDSDNKSSSINSMITNQKCTETENDKDKTDNTIVNLEEDMDTAENVRGNLIDNNNYTTNNEIKQHNHNELLAAKDKEIKALFEEVKRLRSLEQTHLIQIQRLEEHLEAKRQHIVRLESKLDKQQINEAFKESQQQQQLEKGEIQEQQEPEVEQEDLTKDCEMLDVNEASGPHNEDNDDNEVQEIVQDRNCDLTPPPPPTPCLNDKHQENNYDDDDDDDDDDEEHINQNEINQNSTDLEVCTSTKAALKDLQIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNSEESNRVNEEPQCLDTNKSPNVAGSNSNHKQADVEEHVDASKVPKIEILDDDEDEENAKMHLDTNENAAKAATTDELSASIDLEGTTNATSLAAATLDNQLDAEDEDSVTFKQNVERFGTLLGEELVNSYWRRGFDHTKTLYAQQQSQQQQQHQQQHLQQHQQQQRSLQQQSQHHQQQQQHHHQHLIMQQANAHHHHHQQPIQHQHHHQQQQQQQPTQTHLSQPPCGPSSTTLLSQLVNSTFSTPNSNTSTQSSLRSADGFTHTQPVTHHHHHPHHHHLHHQLPAHLAEHHEKSSLNHHDSSASSASTPNLQETRNNEDHHSLSLNGSLKNLEDNNNSLCATPTSHHMGAGHPSHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVLLLKSLIPKKDSGLPPYGSGGGRDDSMSDERIAHILNEASSLMKSTGPPSLHQQHEHQRRPSTIPEDSRSNDDSKSPHPPCSSPFFKEHHSKSQGETVMPGQGHMRPDDMNPEKMARLYQELMARAPRETFPGFLLSPFFSGGLPTAAGMGANAFPGLSTDENMRLAFEREMSKLQQQQQQHAAQPPNFANFSSLMALQQQMLNGAQDLTLGTEDKPKDNNKINGQRSSFEASQNSHSNHGQTTPNAKDSSSSEVERLYPGMVKSEQGNKTPAPLASSNASTTNTNSAAPSPLSNSILPPALTTNEEFSATASPLQRMASITNSLITQPPVPPHHNPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLANKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQVAAAQQSQQQAAQAAVQAAQAAAAAQAAQQHHQNMLLTSPGLPPQHTIALPAANSQPTSGNSTPAGPTPDKKPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSAGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLMELQKERLGLGPNTPLPYPPYFAAAALLGRSLAGMPGTNAQTPVPTTEAELRALNQAFREQMSGLDLSMSSLKRERTDDFEDDMDESHMSENENDDLDDEDKTSDYRSAALTSMNAQQFLNNMRSNRRKPAAPQWVNPAVPNASEAERIINGVCVMQTDTEGQQQTANDEDLHKSHDHNDDNDLMEAPHQSVMEPEVVIKQEKEDCESDGEKTNTDDAPAMTEERIKVVQEDKLRMVRVNRLSNEDETIATAAPNAPATASWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01109239;
90% Identity
iTF_01427365;
80% Identity
iTF_01427365;