Tatr012670.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000030.1:4097415-4101983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.9 8.6e+02 1.5 2.3 3 23 262 283 262 283 0.94 2 9 7.9 1.2e+03 1.1 2.4 2 21 1022 1043 1021 1045 0.92 3 9 0.7 1e+02 4.4 0.9 2 20 1056 1075 1055 1079 0.91 4 9 3.8e-07 5.6e-05 24.1 2.6 1 23 1115 1137 1115 1137 0.98 5 9 0.0035 0.52 11.6 5.1 1 21 1163 1183 1163 1184 0.94 6 9 0.00019 0.028 15.6 0.7 2 23 1194 1215 1193 1215 0.98 7 9 0.01 1.5 10.2 3.6 1 23 1221 1243 1221 1243 0.99 8 9 0.00068 0.1 13.9 0.6 1 23 1249 1272 1249 1272 0.96 9 9 0.00028 0.041 15.1 0.3 2 23 1282 1303 1281 1303 0.97
Sequence Information
- Coding Sequence
- ATGAACGACAGCAATTTCTCCAGTGACACATACTTCTGCTTTCAGGATTTGTCCACATCGCACATTTCGGAAGCAGATCAATCCAGTGTTTTTGGTTATTTCAACTCTCTTGGCAATAGTTTGCAATCACAACAGCAACAACATACAGTGCACTACTTGCAGTTTCCGCCGCTTACATCGAGTCCACAAAGCAGCCATCAAACGATACATGGCCAGCAAAATGGTTTAATTTGCAATATAAACAATAACAACAATGGCAATATTAGCAACGCGAATGGTAGCAGTTTAAACACTCTTCCTTTTGTACAAATACACACTACCGATGTGCATCCGCCTCGTAGTAATTATGGAAATGTATTTCGTCGCAATGCTACAAACCAAGATGAAATTAAATCAGAACCTATTAAATCAGAAAGCGCTGAATCCAGCACGAAAGACAATGCGAATAACACACCCACCCCACCCACTGTGCAACTTGGTGGCACTGTCAACGACACTAACGCCTCAAACGAGCGGTTGTCATCAACGCCGGGAAACTCAGTTTGTAATAGCGAGCAAATGGTTGAGCTGCGTAAGCAAAGGGACATAGAAAATAGTTCCGGGATAAATAACATTAACAATAAGAACTTAAAGAGCATAGATGACAATGGTTCCCTCCCGAAGATTTACAAGTGCTCACATTGCGCTTTTATGAGTTTAAGAGAACAGGGAGTTGAGCAACATGTTAATACAAATCATCAGAACACCGAAAGTTTTCCTACAGAGATTAGGCAACGCATTGGCTGCCCAGGATGTGATAACTTCTTCTATGCCCATAACTCATTTTATGTTCATCTTTGTGAAGATCATCGGATGAGTTTAGATGAAGCCAGCCAACTTTTACAAGCTGTAATTGAAATGTGCCCATATTCAAAGGACCAACAGACGCAGTCACAGCATCACGTTGATGCCCGCACAAAAGAGACGCAACCTAAGATATTTCTAAAAAATGTGGCATGCTTACAGGAGCCACCAACGCGTCCTTTAGATGACCAAATAATGCAGTTGAACGATAGTAACTATTTTCAGATGTCTGACTTCGATGAAGGATGTGGCGCTTTACTTACAGATGTTGAGGACGCTGAAAAAGATTATCCTGGAATTCCAAATACGTCTATTGAAGATATGACCATGGTTGGAGATTCCAATCCAAAACCGCGTAATGCACTAAAGCAGAAGATTTCAATAAAAAGCGTTGATGTGCTGCGGGAACCAGCGTTGTTGCGTCGCGATTTCGACATGCAAAATTTGAATATCGTTGGCGTTGGTCAGTGCAGTGACCATGAGTTCCATGATGTTTTGGAAGCTGGCAGTCAATTCAATTATGGCACCAACCTTGAGTTAGGTGAAAGTACTGCAGCATCGAAGGAAATGACGGCCTTTGAAAAACCCAGACGTCCAAAGATTTATATTAAAAACGTAGATATTCTTAAAGAACCCATTGTGTTACCTTCAAACTTAAATGTGACAAGCGGAGGCATGGATTTCAGTTTTTTGTCACAGAGTTCGGGCAATTATTTGAGTTCTATGAACTCGGAAGTTGTAACTACTCAGGCACAGGTATTTAGTGGGACGTCTGGAACTCATATGTGCATAGGGAACATGGTTGATTCGTCCCTTCCTTACGACGGCTCTACTAGCAACAATTTTTTGCAGAACATAACTGAACTCGAATCTTTTCCTTTGGCACAAAACAGTAACGGCAACAATTTTCTAGAGTTACAAAATATGAGTACAAATTTGACAATTTGTCCAACTCCACAACCTACTGTGACGGAACCAACACCGCCGCCTCCGCCGCTGACCACAATAAATCAACCAAACCAGTTTGATTTTGAAACTGCAGTAGGAGCAGCAACATCGGCCCAGCATAAAAAGCAAAAAATTTTTATTAAAAACGTCGATATTCTGAAACAGCCGCAATTCCAGGAGCAACGGCGCACTCTACATCTGCGTACCGTGGATGAATTGAATTTAATGAACAAAACTGAAGTGGAAAATCTAATTGCGCCCAATTTAGATGGACCTCAAGGTTCCCCACTGAATCAGCATTACGTAGAGTCCAACAACAACTTATCCGCGGAAAATTCCAAGACTTCCGATGATGTCAGCTCGTTCAATAGCTTAAATTTAAAAATTAACGAGTGTGATGACGCACAAGGACTGCATAACTGGACAGGTGGCTATTCACTTGGTGTTGAATTGGAGTCAATTATAACGGAGCACACGCAGGCTATATCAATGAGCGCTGACACAGAAATGGCACTACAAAAGCAGCTCTACGATCTGGAAACACCACAAATGTCTGTCATATCAATCCTGGACATAGAAGATTTTACTGATGGCCAGAAGAGACAATCGTTGTCAAATGGTACAATTGATAACAGTATCGTGGAAATTGCTAAAGAGATTGTCGATCAACGTGAGGTTGTGTCAGAAGAGAACTCGGCTAAAATGATGCCTCAGCCTACAGAAGAACAACATCGGTGTTGTGATGCTATCCAAGATCAAAATACCGATGAAAGTGTTGAGTATGCATCACAAAATAAACAAGGTTGGGTAGACAATTCGAATGAGCTAAAGCGTGAACAACAAATAAGTGTCAATCAGACGTCTGAGGCCAGGACGCCAACTCCAGAGAAACCAGAGTTAGTTTATGCGACTGCTGGTGATTTGACCGAACCCATACATGAATTAGCATCGTGTTCTACAGAAATTACTTCCATGACTGTGCCTGAACCGGTTCCATCACCCATTGCTCCAACACATACAGCAAATGCAAATGTAAATCAAAGCGTTACTATAACAACTGCTCCAGACAAAGCTCCTGAGAAGGGACGCATTTATGTAGCTGAAAACTTGATGAAAGTGTCTTCTGAAAAAACCACGACCAAAGAATGCCCAGTGGCGGTTTCCATAACTGGTGGCACCTCGAATCGGGGAAGACCGTTTGGATCGAATCGCACGGGCATCACAAAAACACGGAAATTGTACGGAAACGTGGCGGCGATTGATATAGGAATGAAATGCAATGTAGCTGGATGTGCTTTTAGATTTAAGAAATCAGAGTCATTGGATTACCACAAACGTTGTCACACTGGAATGTTGGGAGCTTCACAGTCAATGATGTGTCCCGAATGTCAGTCGACAAACTTCTCTAACTGGAACACTCTCCATACACATCTTTGGCGAACACATCAGATCGACATGGAGTTGTACAGTTGCGAATTATGTACCTTTAAGACCCCAATTTATTCGCGCCTGGTGAACACACATTCGAAAATACACTCTGAAGAGCGCAACTACAAGTGCGATCAATGCGACAAAGCCTTCAAAAATAGCAAACAGCTGAAGAACCATCGCCGGTGGCATCGCAATGCAGCAGCAGCCTCGCCAGTCACAGTAGCAGCTGGAGAAGGGGCGACAAAGCCAAATTCTCAACCTCTGCATCGTTGCAATTACTGCGGTTCTGTTTTCTCACATCGGAAAACACTGCGAGAACATGTTTGCAAGGAAAATCCTGACGTGCAAAACATCATGCGTTGTGATATTTGTGAACGAGTCCTGTCATCAAAATCATCGTGGACACTTCACAGGCGCACGCATGAGATGGCGAGTCGTTTTAAGTGCACTGTTTGCGATTACAAAGCAAATGATCACAATGCATTTCGACGGCACAAAATGACACACGACAAGAGCAAGATGTATATTTGTCCCTACTGTGATTACAAGTCTATACAAAGTATAGCTTATCAGAAACATATGCAACAGAAGCATCCACAGCTGGCTGACAATATTGTGTTGAAATGTGGAGAGTGCAATTTTTCCACGATCAACAGTTCCTTACTTACAATTCATATGGCGAAGCATACCAGTATTGAAGACGACCCACAGACAACAATCATAACAGTCACCAACGACATCAAGCTCGGTGCTAACGAAAGTATATGTTCCACGCAATCGGAGCACGTCATCGAAGGCAATAGTAACGAGACTGAATGCACTGCCGAACAGCCACAAAAGAAGGTGCAAAAAAACAAGATCAAAGTAAAAAGTGATCTTCTATTAACCGATACCGCAAAATTCTCAAAACATACAAATTCCAAAAACGTAACGTCACGGGTCGTGCGATTCGAAAATGCAGTTACGTAA
- Protein Sequence
- MNDSNFSSDTYFCFQDLSTSHISEADQSSVFGYFNSLGNSLQSQQQQHTVHYLQFPPLTSSPQSSHQTIHGQQNGLICNINNNNNGNISNANGSSLNTLPFVQIHTTDVHPPRSNYGNVFRRNATNQDEIKSEPIKSESAESSTKDNANNTPTPPTVQLGGTVNDTNASNERLSSTPGNSVCNSEQMVELRKQRDIENSSGINNINNKNLKSIDDNGSLPKIYKCSHCAFMSLREQGVEQHVNTNHQNTESFPTEIRQRIGCPGCDNFFYAHNSFYVHLCEDHRMSLDEASQLLQAVIEMCPYSKDQQTQSQHHVDARTKETQPKIFLKNVACLQEPPTRPLDDQIMQLNDSNYFQMSDFDEGCGALLTDVEDAEKDYPGIPNTSIEDMTMVGDSNPKPRNALKQKISIKSVDVLREPALLRRDFDMQNLNIVGVGQCSDHEFHDVLEAGSQFNYGTNLELGESTAASKEMTAFEKPRRPKIYIKNVDILKEPIVLPSNLNVTSGGMDFSFLSQSSGNYLSSMNSEVVTTQAQVFSGTSGTHMCIGNMVDSSLPYDGSTSNNFLQNITELESFPLAQNSNGNNFLELQNMSTNLTICPTPQPTVTEPTPPPPPLTTINQPNQFDFETAVGAATSAQHKKQKIFIKNVDILKQPQFQEQRRTLHLRTVDELNLMNKTEVENLIAPNLDGPQGSPLNQHYVESNNNLSAENSKTSDDVSSFNSLNLKINECDDAQGLHNWTGGYSLGVELESIITEHTQAISMSADTEMALQKQLYDLETPQMSVISILDIEDFTDGQKRQSLSNGTIDNSIVEIAKEIVDQREVVSEENSAKMMPQPTEEQHRCCDAIQDQNTDESVEYASQNKQGWVDNSNELKREQQISVNQTSEARTPTPEKPELVYATAGDLTEPIHELASCSTEITSMTVPEPVPSPIAPTHTANANVNQSVTITTAPDKAPEKGRIYVAENLMKVSSEKTTTKECPVAVSITGGTSNRGRPFGSNRTGITKTRKLYGNVAAIDIGMKCNVAGCAFRFKKSESLDYHKRCHTGMLGASQSMMCPECQSTNFSNWNTLHTHLWRTHQIDMELYSCELCTFKTPIYSRLVNTHSKIHSEERNYKCDQCDKAFKNSKQLKNHRRWHRNAAAASPVTVAAGEGATKPNSQPLHRCNYCGSVFSHRKTLREHVCKENPDVQNIMRCDICERVLSSKSSWTLHRRTHEMASRFKCTVCDYKANDHNAFRRHKMTHDKSKMYICPYCDYKSIQSIAYQKHMQQKHPQLADNIVLKCGECNFSTINSSLLTIHMAKHTSIEDDPQTTIITVTNDIKLGANESICSTQSEHVIEGNSNETECTAEQPQKKVQKNKIKVKSDLLLTDTAKFSKHTNSKNVTSRVVRFENAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -