Tatr016573.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000043.1:2224311-2233109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0022 0.33 12.3 1.3 1 23 1861 1884 1861 1884 0.91 2 8 0.0037 0.54 11.6 1.3 1 23 1889 1912 1889 1912 0.96 3 8 0.0011 0.17 13.2 2.3 1 23 2093 2116 2093 2116 0.95 4 8 8.9e-06 0.0013 19.8 0.8 1 23 2124 2146 2124 2146 0.98 5 8 0.00017 0.025 15.8 0.2 1 23 2153 2176 2153 2176 0.97 6 8 0.0022 0.32 12.3 1.2 1 23 2182 2204 2182 2204 0.95 7 8 0.00036 0.053 14.8 0.7 3 23 2211 2231 2209 2231 0.96 8 8 0.00099 0.15 13.4 2.0 1 23 2237 2259 2237 2259 0.99
Sequence Information
- Coding Sequence
- ATGATTGGAAAGTTTCGCCGCAAATGCCTTAAAGTGCAAATGCGTCTGCAGGCGCTGTGCGAGGAGCGTCGCCTGGAAGAACAACAGCAACAGCTGCAGCAACTCGACGGCGATAAGGAGAACCTGAACATGCCGCCTGTGCTGGAAATCAGCAACGATCTGATCAACGACAACTACGGCCAGCCGCTGAGCGAAGTGGAGCTGTTCGAGAGCAATTGGACTGCCGCCGAGACTCACAACGAATCAATGAGTCAGGACTTGTTGGATCCAAACAAATGTGGCACAGCTACGAAAGCTGCTGCTACTGCTAATGAACTGAACGATGTATCGCGATCTGCCGAAGGCTGTCCCGACTTTGTTTTGCCCTCGAACACGGGCCTGGTCAACAGCATGGACTTGGCGATCAAACCCAACATCGGCGATGAATCTTTAATTGATACTCAAGCTATTTTCAAAACTGATGTAACCGAGGCAATGACTGAAGCCGCAGACACTTCTGCTGTCGACGGCGACCACACGGAGAAAGAATCAAAATTACAATCTGATGAAATTGAGGAAGAAATAACATTGGAAGCGGAATCGGGTAACAAAACTAATTCTGATCAAGAAGTCGATGATAGTTTTATGGAAGATTTGCCATCGAGCAAAGACCAAGGAAGTCTGATTGACGACTTGACCGAAAGCAGCGCTGAAAAAATGTGCATTGATCTGTTAACATCAGCAAAAAGCGAACAAGCAGCCGCTTCAGAATGTCGTGAGATGTCCCCGATTGCGTTGAATGGACCCAGTGGAACAAACAACCAGACTCCTTACAAACAAAACAATGATGAAGAACCGAAAGACTGCAACTCGTCTGAAGCGATGGAGGCGATGGAAATTTGTGCTGAGGCTGACGAAGGAGAATCGCAGCAGTTGCAAAGAACTGATTTACAAGAGACTAAAATGCAAACAACACCAACTGAAATAAAAACCATTGACTCGAAAGATTCCATAGAAATGAAAGCAAGGAAGGAAGCGGCGGCGCTTTCATCCACAACAGAACCAGAAAATCTCATTGATAATAATGATGATGATGGCTCTAAATCGAAAGAACAGACGTTATCCCCATCGAGTAGACGCGATTCGAAGGAGGAGACGACGAGATTCGTAAGCAAAGCAGCTTTAAAGGAATACAGCTCGCCGCCCAGCAGCTGCTATGACAACGCTTCGCGCATCAATGAAAGGGAAAACATGACAGATGAAAGTATTGCAGATGATCCATCGAGTGCGGTGCAGAGAGCTGCTTCGCCGACATCGACCACACCACCAACAATTGAATGCCAACCGGGAAATGTTGCGGTTATTTTCAAAACTCCGTCTACGAATCCATACGACACCGTTTCAACATCCCACTCGCACTCGGAGAAGCGTCGAAGGAAGGATAAATCAAGCGCCAAACCGAAGTCTCTAATGAAGCAACATCATAAAAAAGCACGAGCAGGCAAGTCGAATAAAATAACTGACGCTATAGTGACACGTGAGTGCAGCGTGCGTGTGTGTCGACTAACCAACAGTCAGTTATCGGGAATTGTAGTGCCAAACGTAACAGGAGCAACAATAACATCGACATCATCGACAATTCAAAGTGTCTGCGACAATAAAGAATCTATAAATCAAACTTCCACAGGAGAAGCTATGAATGTCGGCGATTATCGGGGCAGCGCCCAAAATATAAAGCAGCCACGCAACGACGACGACGAATACGACAACGAAAGTGGTGCTGTCAGCAAAAAGCCAAGGTTGATTTCGAAGAAGGGTGAAGATGAAGGGCTTCTGCAGTCGGCTAAAAGAAGCGTATCACAATGGAAAACAAAAGCCGAAATGAAAGCTAACGCTAGCCTTCTAGGATTAAGAAAAGCCACACTACGTGCCCAATGGAAAGCAGCTGACGCTGAGCATGATAACGACACGCAGACAGCCAACCAGCCAGAGGACGAAGCAGCCAAAGTGACGAGCCCACACATTTCCACCGAGCAGAAGAACAAAAAACATGTCATTACAGATCACGCAAGCGAAGAATTAGTTGACGAGCACGCGTCGCAAGAGCAGCCTGCAAAAACCACCCGCGAAGACGAGTGTGAAAACGTTGCTTCCGCTGGAAACCCTCAAAAGGTCGGGCACACGAAAGCATCAACACACCAAACAGCAGCTGGGCACCAAGCAGAGCGAAATAGCAAACGGTTGAAGCATTTACGAAAGCAGACGAAAGTTTTGAGGGAGAATTTGAGGAAATTACGTCACCGTAATAATGCTGCCGCTCAGGAAAGGAAAAGTGAGCAGCGTAGGCGTGGTGATGAGCCATTAGCAACCAATGTTAACGTCCTGTTGAACGCACAGGACAAGCCTATGGCAAGCGAGTTTGCAGGCGGTTCGCAAACGGCAAATGATTCGAAGGATGTCGATTTTCATCGAGAGCACTGCGATAGCAATACGAGGGGAATAGAAACAAGGGAAGCCCTTTCGAACGATCCAATTGCGAAAGTCAGTACGGCTAAGAGTAATGAAGCATTAAACAATGAAAGCACTCACGTTAATGCTGCTATCGGCAGCACGGCAATCGCTGTGTTGGATGCTATAAACACAAATGAACCCTCCCTCAGTGCAGCTGTCGCGAATGAGAACGTCGATTTGCAGGTCACTTCGAATTCTCCGGACCAATTCAAAGTACCGCCGCAGGCGGAGGTGGAGAATATTTCAGGAAAACACGTCAAACCAGTCGATAATCCCGCAAAACTCCCCAAACTTATAGTCAGGGTTCCCCTTGCAGTATTAAGCGAAGAATTTCAAAGATTACATTTTCCCAACAAGCGTACAATTCCCGATCTGAGCTTGGTTGATACATTCAGTCCGAAATCCATTGGCGGCCCCATTGATTTCCCCAAATCAGACACGGAAAACAAGATTAATAGTAATTTGAAATCCGCTGATTCTAGGCTTCAGCATCGAGACGATTCTGAAAATGATGCTCTAGGCGTTTTAGCGACACAAACGAATTTTTGCGGAGGTGCTGCAGCGGAGCCCAGCTCTGAATCCGCTGGAGCACATTCACCGGATTGCAATGTCGCTGCAGAAGTTGTCGGCGACAACAAAGCGGCCGGCAGTAGTCATAACGAAAGCGATCAGAGCGAATTTTACGGCTTTTCCAACGAAAGCGACGCCGTTTCATATGGCACACAAGACGATGCTGATGCATCGTTGCTAGAAAAGTGCTCCACTTCAATATCGTCACAAATTACCGACTATATTAATGAATTCCAAACACATTGTCTTGATATAGACGACAGATCGGAGCCACCATTCACGAACGACGTTGATCCTGAGAATCAAAGCATGCTCCAGCTCCCGACGCCACGTGACAGCGCCCATTTGTCCAGCAACGTGATGGACAGCTTCGTGGACACCACGCTGCACGGTTTGCTGAACGATATCCAAGAGCAGAGCATTTTCTCGCCCAGCAGCACCCCGATCGTAACGATGGAATCGGAAGACTTCCACAATCATTCGTCGTACTCGCCTTTGTCGGAGGCGTCGTCCGATCCCACGCACAGCGTCCACAACGACTTCATGCACAAACCGAACATGTGCGACTTGAGCGACCCCGGGCTGATGGTGAATCCGAACCATACCATCGATCCAGTCAACGCACGCATTCGAATGCCATGCAACAGCACCAAAAATATATACAGCAACGCCCAACAGCAGCAGCAGCAGCAGCAGCCGTACTCCGAGTACGCCGAATGTTTTACAGAAGACAGCACGCAGTCGGAGCTGATTGGCTTCCAGAATGACATTCCTTGCTTCGAAAATATCGAGTTGAACAGCAGTACACCGCATCGCAACACGACGACGCCGGCTCCGTCTGCTATAGCAGAAGCGCAAAGACAACTTCCATCTTCGCGAGCCGCAAATAATGCTTTGCAAGGCCCCCCTGTAGTGCCTCCAGCTAAGAATCTGGAATACCCGCTCAAGCCTAGTGAAGTTGGGAACGTCCAATATTTGGGTCTCGGCAATCAGACTGACTTGTGCAAGTCGCTCAGCACCGATTCAATGGGTCTCGTCTGCACTACGGGCACCGGCGTACAAATGCACACGCCCACGATGTCTTCCTCAATCGAGCCTGCGCAGAAAATCGCCATGGAGACCGACACGTCGAGCAGCTTGGGTGACGATTCTCGAGAGTATGCAGTGGACAGTGCGACGCTGCATCTGACGCAGATATTTGCTGATATGCCGCTGCATCAAGTGCAGGATCCTGTCCCGAGTACTTCGCAGAATTGTATGCGAGCCAGCAGCATGCCTGCCGAGAAGGCGGTACCATTCAATGTAGCTGTTGGAAAGAGCTCGGTGTTGCCGAAATTCGCCGTAGGAAACCCAGCGAAGCAGTTGGTTTACACGAATCAACGCGTAGCTGTTGAGTGCACAGCGAATCTTAAGGACAGTCCCCAGTACTACCGACTGCAACCAAATGTTCTCGACAATGGACACAGGAACGCGCAATTTTTTACAAGCACCAACGCTTTACCAAGGCAAATATCCACAGGAGTCGGCGGACAAGGAGCGCTCAACATGAACAGCACCAAGTATACACTGTATACAGAGGTGCTGCCGCAGAACCTGCAATGGCAGGCAGCACCATCACTATCCAATCCACAGCATCAGCAGCAGAGAACGACGACATATTTCATCAGCACTGGCAACATGAATCAATCGAATCTCATTACGACGACGACATTAGCTGTGTCGCCGATCATCAACGCAGGAACACCGACCATCGTTCGCAACACTCCAGTCTGTGCCACTAACATGTCCGGTCTCAATATGATCGCACCTACGACGCAACTAGTTCGGCAATCGACGTTGGCAGCAGCAGCAGGCGGCCTGAATGTGCCACGAGGACGCGAATTGGACAAACCGTCGGTGGATGCCAACGAGAATTACATTGAAGGAATGTCCAATCAGCCGGTGATGATAGTCTTTCCGCAAGATTACATAAAGGAAGCGCCGGCCGCGGTCCCCACGCTCTACAACAACACAACAACCAATCAAGTAACCATAACGCCTATTCAAGCGAATTTAAATACTGTTAAGATCCCACCGCCAATGAATCCCAACACCATCACCATTATTCCCACTACCGCCGCCGCTGCACCTACTTCAGTTCCAGTTTCTCTTCCTGTTTCAGTTCCTATCTCTAGTTGTTCAGCAAAGGTTCTGCGGCAGCCTCCAATTGCTTCTCCTGCACCTCAGCCACATCGTAATCAGCAGCAAGCACAACAGACGCTACAACTGCAGAAGCCGCATCAACCACAACAACTGCAACCACCACAACAACTGCAACAACCGCAACAACCACAACTATCACAACAAGCAACGCAACCACAGCAACTACAAAAGCCGCAACAACGCGGAAAGTCACATCAACCGCAGCCACAGGCGCAAAAAATCAACTTGACTTGTCGCTTCTGCCATAAACGTCCGAAATTCACAAACAACCTGGACTACAGCAATCATATCATAGCAACACATCCGGGCGAGAACCCCTACAACTGCCCGCACTGTCCGCTCTTCTTCACGCGCCGCACTCAACGTCAGCAACACATCGTTGAGGCGCACAGTGCCAATCGCTTCCACTGCGCTCAGTGCGGCCAGAGTTTCAGTGCGCAACGTACGTTAGATGTGCATTTGCAACGCTCTCACGTGCCGGCCGAATCGCCGGCGGCACAACAGCAAAGAGCAGTCACACAGTCGCCAATGCTAGACGTGGCTCCATCGTGTTCGCAGCAACAACCGCAACCGACCGAGGGGCATTTGGCGGCGACCAACTACAGGTCAAATGCAAGCACAACTTGGCAGGCACGATCGCCTGGTGTCCAGCAGCAGCAGCAACAGCAGCAGCAGGTGCGCATTGAGGACGTGCAGCCGCAGGTCGCGGAAGGAAAACCCAACCTTGTAGACAACGATCAATTGGCAACAGACAGTATAAAGTTGAAAAAGCCGCCGCATCGTATACTTGGTTGTCCGGATTGTGATGATTCTTTCGATGATTTAGCTAATCAGGAGCCGGGCGCCCAACGATTTTCGCCACATTCGCACCATGGATGCGCATCGCTCAACATGCCGTCGCCGGAACAGACGGAGCCCGATTCCACATCAACGACAACGCTGCGTCAGTTTCGCAAGCAGCGTTCCTCGTCGAAATCATCGAGTGACACGCCGGAGCGTGTTCTACGCAGCAGCCACAATTGTTTGATGTGCGAAGAGCGATTCACCAGTGAAACAACGCTGCGAAAGCACCAACAGATGGTGCATGGAAATCACTCGGCGATGCCGTTCGTGTGCTCCATCTGCAAGCGGGGCTTCCGGATGCGCACCGCACTGCAGCGTCACATGGAGACGCACGACAGCGTGGGGCGGCCGTACGAATGCAACATCTGCTTGGTGCGTTTTCCACGCCCATCGCAACTCACCCTCCATAAACTGACAGTACATTTCTTGAGAAAGCCGCACGTCTGCACCGCTTGCGGCAAGCAGTTTGGCACCGAGAGCGCTTTGAAGACGCACGAAAAGTTTCACGGCGAGACAAATTTAGATTGCGATGAATGCGATAGAAAGTTTTCCGCCGAGAAAGAATTGCGCCAACATCGACGTAATCATGCAGGAAATCATTTCTACAAATGCCAGATTTGCCCGAGTACATTTGTGCATTATACACGCCTCAGCGCTCATGTTAGAACGCACATTCCAATTGGGATGTTCCTCGAAGGTGATTCAACCTCTGTGCAGCCGGACGGAGAACATGGACATGAAAATTCTACACATGCTCAACTAGAAGACACCGAACAAATCGATTTTATGGACAACGCCAACGGCAATGAAATTCGTAGTGCTCAAAATAGCACTACATAA
- Protein Sequence
- MIGKFRRKCLKVQMRLQALCEERRLEEQQQQLQQLDGDKENLNMPPVLEISNDLINDNYGQPLSEVELFESNWTAAETHNESMSQDLLDPNKCGTATKAAATANELNDVSRSAEGCPDFVLPSNTGLVNSMDLAIKPNIGDESLIDTQAIFKTDVTEAMTEAADTSAVDGDHTEKESKLQSDEIEEEITLEAESGNKTNSDQEVDDSFMEDLPSSKDQGSLIDDLTESSAEKMCIDLLTSAKSEQAAASECREMSPIALNGPSGTNNQTPYKQNNDEEPKDCNSSEAMEAMEICAEADEGESQQLQRTDLQETKMQTTPTEIKTIDSKDSIEMKARKEAAALSSTTEPENLIDNNDDDGSKSKEQTLSPSSRRDSKEETTRFVSKAALKEYSSPPSSCYDNASRINERENMTDESIADDPSSAVQRAASPTSTTPPTIECQPGNVAVIFKTPSTNPYDTVSTSHSHSEKRRRKDKSSAKPKSLMKQHHKKARAGKSNKITDAIVTRECSVRVCRLTNSQLSGIVVPNVTGATITSTSSTIQSVCDNKESINQTSTGEAMNVGDYRGSAQNIKQPRNDDDEYDNESGAVSKKPRLISKKGEDEGLLQSAKRSVSQWKTKAEMKANASLLGLRKATLRAQWKAADAEHDNDTQTANQPEDEAAKVTSPHISTEQKNKKHVITDHASEELVDEHASQEQPAKTTREDECENVASAGNPQKVGHTKASTHQTAAGHQAERNSKRLKHLRKQTKVLRENLRKLRHRNNAAAQERKSEQRRRGDEPLATNVNVLLNAQDKPMASEFAGGSQTANDSKDVDFHREHCDSNTRGIETREALSNDPIAKVSTAKSNEALNNESTHVNAAIGSTAIAVLDAINTNEPSLSAAVANENVDLQVTSNSPDQFKVPPQAEVENISGKHVKPVDNPAKLPKLIVRVPLAVLSEEFQRLHFPNKRTIPDLSLVDTFSPKSIGGPIDFPKSDTENKINSNLKSADSRLQHRDDSENDALGVLATQTNFCGGAAAEPSSESAGAHSPDCNVAAEVVGDNKAAGSSHNESDQSEFYGFSNESDAVSYGTQDDADASLLEKCSTSISSQITDYINEFQTHCLDIDDRSEPPFTNDVDPENQSMLQLPTPRDSAHLSSNVMDSFVDTTLHGLLNDIQEQSIFSPSSTPIVTMESEDFHNHSSYSPLSEASSDPTHSVHNDFMHKPNMCDLSDPGLMVNPNHTIDPVNARIRMPCNSTKNIYSNAQQQQQQQQPYSEYAECFTEDSTQSELIGFQNDIPCFENIELNSSTPHRNTTTPAPSAIAEAQRQLPSSRAANNALQGPPVVPPAKNLEYPLKPSEVGNVQYLGLGNQTDLCKSLSTDSMGLVCTTGTGVQMHTPTMSSSIEPAQKIAMETDTSSSLGDDSREYAVDSATLHLTQIFADMPLHQVQDPVPSTSQNCMRASSMPAEKAVPFNVAVGKSSVLPKFAVGNPAKQLVYTNQRVAVECTANLKDSPQYYRLQPNVLDNGHRNAQFFTSTNALPRQISTGVGGQGALNMNSTKYTLYTEVLPQNLQWQAAPSLSNPQHQQQRTTTYFISTGNMNQSNLITTTTLAVSPIINAGTPTIVRNTPVCATNMSGLNMIAPTTQLVRQSTLAAAAGGLNVPRGRELDKPSVDANENYIEGMSNQPVMIVFPQDYIKEAPAAVPTLYNNTTTNQVTITPIQANLNTVKIPPPMNPNTITIIPTTAAAAPTSVPVSLPVSVPISSCSAKVLRQPPIASPAPQPHRNQQQAQQTLQLQKPHQPQQLQPPQQLQQPQQPQLSQQATQPQQLQKPQQRGKSHQPQPQAQKINLTCRFCHKRPKFTNNLDYSNHIIATHPGENPYNCPHCPLFFTRRTQRQQHIVEAHSANRFHCAQCGQSFSAQRTLDVHLQRSHVPAESPAAQQQRAVTQSPMLDVAPSCSQQQPQPTEGHLAATNYRSNASTTWQARSPGVQQQQQQQQQVRIEDVQPQVAEGKPNLVDNDQLATDSIKLKKPPHRILGCPDCDDSFDDLANQEPGAQRFSPHSHHGCASLNMPSPEQTEPDSTSTTTLRQFRKQRSSSKSSSDTPERVLRSSHNCLMCEERFTSETTLRKHQQMVHGNHSAMPFVCSICKRGFRMRTALQRHMETHDSVGRPYECNICLVRFPRPSQLTLHKLTVHFLRKPHVCTACGKQFGTESALKTHEKFHGETNLDCDECDRKFSAEKELRQHRRNHAGNHFYKCQICPSTFVHYTRLSAHVRTHIPIGMFLEGDSTSVQPDGEHGHENSTHAQLEDTEQIDFMDNANGNEIRSAQNSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -