Basic Information

Insect: Thecophora atra
Gene Symbol: -
Assembly: GCA_937641085.1
Location: CALMRH010000024.1:1457252-1460896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.12 17 6.9 0.0 1 23 116 139 116 139 0.94

2 15 0.0065 0.95 10.8 1.3 2 23 188 210 187 210 0.97

3 15 2.9e-05 0.0043 18.2 0.1 1 23 325 348 325 348 0.95

4 15 2 3e+02 3.0 0.3 2 13 368 379 367 391 0.73

5 15 0.049 7.3 8.0 1.0 2 23 399 421 398 421 0.96

6 15 0.00029 0.043 15.0 1.3 1 23 471 494 471 495 0.95

7 15 9.7 1.4e+03 0.8 0.0 2 14 513 525 512 529 0.81

8 15 0.0035 0.52 11.7 1.4 2 23 545 567 544 567 0.96

9 15 4.2e-05 0.0062 17.7 0.1 2 23 641 663 640 663 0.95

10 15 0.0049 0.72 11.2 0.3 1 23 770 793 770 793 0.93

11 15 0.025 3.7 9.0 2.8 2 23 843 865 842 865 0.92

12 15 0.056 8.3 7.9 0.5 1 22 935 956 935 958 0.89

13 15 0.0019 0.28 12.5 2.8 1 21 1010 1030 1010 1031 0.95

14 15 0.00029 0.042 15.1 0.2 3 23 1088 1109 1087 1109 0.98

15 15 0.25 37 5.8 1.7 2 23 1159 1181 1158 1181 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.12	17	6.9	0.0	1	23	116	139	116	139	0.94
2	15	0.0065	0.95	10.8	1.3	2	23	188	210	187	210	0.97
3	15	2.9e-05	0.0043	18.2	0.1	1	23	325	348	325	348	0.95
4	15	2	3e+02	3.0	0.3	2	13	368	379	367	391	0.73
5	15	0.049	7.3	8.0	1.0	2	23	399	421	398	421	0.96
6	15	0.00029	0.043	15.0	1.3	1	23	471	494	471	495	0.95
7	15	9.7	1.4e+03	0.8	0.0	2	14	513	525	512	529	0.81
8	15	0.0035	0.52	11.7	1.4	2	23	545	567	544	567	0.96
9	15	4.2e-05	0.0062	17.7	0.1	2	23	641	663	640	663	0.95
10	15	0.0049	0.72	11.2	0.3	1	23	770	793	770	793	0.93
11	15	0.025	3.7	9.0	2.8	2	23	843	865	842	865	0.92
12	15	0.056	8.3	7.9	0.5	1	22	935	956	935	958	0.89
13	15	0.0019	0.28	12.5	2.8	1	21	1010	1030	1010	1031	0.95
14	15	0.00029	0.042	15.1	0.2	3	23	1088	1109	1087	1109	0.98
15	15	0.25	37	5.8	1.7	2	23	1159	1181	1158	1181	0.95

Sequence Information

Coding Sequence: ATGGACGACGTAGTACCTTGGAATATGTTCAATAGCGATTTCGTCGCTGAAGAAACAGAAGAATTGCTAACAGATGAGCTAATGGCAAAGTATCGACAGAGTGATGATCATATGACTGTAGTTAAGGAAGAAGCTGCTGATAGTACTGATGATTACAACATGGAAATGAAACAGGAGAATGATACCAGCAATTACAGTCAGTCCGGCAAAAAATTAAATGACAAACAATTATACCACTTTTCAGCTCGAAATGTCGATGTAACCAATCAGTCAATTCAAGACGAGGATACTTCAGAATATGACAAAGGATCTACTAACCGCATCGATTACGACAGTGTGATTATATTTGTCTGTCCGGCATGTGGTCTGGAAATTGAGTCACAAAGCAAATGGAAGGCCCACATCGATTACGTACACAAATATTCGACACGGCGCGGTCTTAATTTTATGCAAATAGATAAGCTTTACCATCAGTGTTTGGAATGCAATCGTAATATCGCAATGCACAGTATGGAAAACTTGCTGAAACACAAATTTACACACCTTCCGTATAAGCGCGTTAAGTGCAAGTTATGCTCGAAGCAGTACAAGTATCGCCAAGATATAATGGTTCATCTTCGTATGACGCATCGTGAGGAACTGATTAATACAAATACATCTATTCGGACAAGAGCAAGTATAAGCCGCAATGAAAGTATCAGCAATCTTTCTACAAATTTTGAAATAAAAAATGTACGGGAAAACGCAGTCGACATATTTGAGAGTACAGTCGAAGGCGTCCAAGTCAAAAGCGAACCAATAGTCGACAATGAAGACGATGAAGAGTTGACATCATCGGCAGATAACCAACTAATAAATGTTACCTTGGACGAATCACTAAGTCAAAGTTCGTCACACTTATCAGACACATCAACGTTGCAGCGTAAGGTTTCGCTTAGTAAAGAAGAACTTTGTGAAAGACTTTATATTCAGTATATTTGCCCGAAGTGCGGAGAAGAATTTCCCAAACAGTCACAGTGGCAACAACATATTGAATATGTACATAGTTTTGACACACGTAAAGGACTCAACTTCAATTTGCTCAATGCAAAGCAGCACACACAATGCTTGGAGTGCGGAAGAGTACTCTCAAACAATGCAATACGCAATATGCAGAAGCACAAATTCACGCATCTCCCATACAGGTCTTGGTTGCGTTGCAAGCTCTGCTTTCGCACATTTATGGGAAATAAGGAAATCGTAAAGCATTTATTGACGCAACATCGCTTGTGTGAAGAAGTAGAGGCGAATAGCGACAGTCATGATGGTTTGGCTGGTGACGACGAGCAGGAGAGTGGAACAGTGGATGGCCAAGCATTGGAACAGTCACGAGACGAACGACCGAACGACAACTTTGAACCACATATCGATTACATGTGTCCGCAATGTGGCAAGGAGTATTTCGACAAGCGTCTATGGCGTAAACACATCGTTAAGGTGCACCATTTAACAGATATGAAGGTGCTTAATTTTAAAGTCGTCAGCTGTCGCGAAGTAATGTGCTTGGAGTGCGGTAAAATTATTACTAATGCTTACGGCGTGCAAAATGCACAACAGCACAAATTCACACATCTGCCGTATAAATCATACGTTCGCTGTCGTCTCTGCAACAAGTCTTACACTGATCGCAAGGGTATAGTAAAACATTTGAAAAGTAAACATCGTCTGGGAGATGAAGAGGCACCGCAATCACTTTCATATTCACCTCCAGTACAGGAAGCATCTTCGTTGCCAGTGCAAAAGGAAATAGTCAAACATGAAGATTATACATTTGAGATCAAGTACTTGAATGATGAAGATGATGTCAACGACACGCTGGACGACGATACACCTGTCCCAGAATTAAACTTTAGTGCTAGTTACTCTCAGTTTCCATCGTTGCAATGTAAACAATGCACGTTGGTGTTTGCCAGACAAGCAGAACTTCAGGCACACATTAACGAAGAGCACGAATTTCTTGATTTCAATAATTTAAGACCATTGCCAGAAGGACCTCGACCGAGTTATCGCAATAATATTGCGGACGTGAGCTCGGCTAAAGTGCCACCAACAATACAGGAGCGACCCTTTCATCTAGCACTATCCTCGCAGAAGGACGAAGAGGAGAAGAGCTCTAAGAGCTATAACGGATGGCCGTCTGTAACGCTTGGCGCGAAAAGTGACGATTTCTTGAATTCAACAGAGTCAAATAATGATCTACTTGTGCCCACAGGCGATGTTGAATTGAATTCTTTTTCAGAAGTCGTAGGCATTGAAAAGAATTTCTGCTACCTATGTCCCAACTGCGGACTTGAATGCGCTACGCAAATGCTTTGGCGTCGTCACATCAACGATGTACACAACTATGACAAACGCGATGCACTCAATTTCCGCCAATTGCACAAGTTTCGCTACAAATGTTTGGAGTGTAACGACGTTGTGAGTGGCACGAAGTTGAAGGGCTTACAAGATCACAAGTTTCGGCATTTAGCCCATAGACTGTACATTAAATGCATTATATGCGGCACTTGCTACAACCACAAGCCCAACATGATAAGTCATTTACGTCAGCGACACAATATTATTGACACGCGGACGCCGTTGGAAGGCGCAAATGAACAGCTAAAGACTGTTTCACCATTAAAAAGAATTACATCAACTGCTACATCGATTACGGAAGCTGCATCGTCAACAGCTTCCCTTCCAAAATTACAACCTATTCCAAAGACAATCGGCGACGATTCGCTTAATAATCACAATGCCGTCGATCACGAAGCCATTACGTATTTTTGTCCGCAATGCAATGAGAATTTTGGAAGTCATTTGCTTTGGCGGAAGCACATTGTCGATGTACATAACTTCAACAACAAACAAGGATTGAATTTTCGACAAATCGACGAACATCACTTCCTGTGCCTGCAGTGCTACAAACGTGTCACCGTCACCCACACGAAAGGCGCAATCGGTCAATTGCAGTCGCACAAATTCCGTCATTTGCCCTATAATTCATTTAAATGCACCACTTGCAATACTGAGTTTGTTCGAAAGCAGATGTTTTTTAAGCATCTTAACAAAGTGACAAATGAATGCGATAGCAAAGTATTTGCTGTACAACGTGAGGAATCTAAAAAATTGCCATTAAGGCAGCAGAAAGCAAACGTAAATGCAAATGTATCTGTGGTTGATAACAGCTGCTTTATGAATACATGGGAAAGTAATTACCAAGACTGCTTTGTACTACTTTGCCCTCAGTGCGGTCAGCAATTCGTTTCACAGCGTCAATGGCGTGAACATATCAATAAGGCGCACGATTTCATAAAACGCGAAACGCTAAACTTCAAAAAACTAAATTCCAATCTGCACGAATGCCAGCAGTGCTTGGAGCACGTCAGTGGCAATAAATTGCGAGATCTGCAAATACACAAATTCAAGCATTTGCCTTTTGGAACATACATTCAGTGTAGATATTGCAGCGCGTCATATACGCACATGCGGAATATACTCGAGCATCTCAAGTTGAAACATCGTAATATAATAGACAAAATCAATGCAGATTTTGACGAGATCACTTTCCCCGATGATGAAACCAATGGGTTTGAGGCGAGTGAATCGTATCTGCTGGAATAA
Protein Sequence: MDDVVPWNMFNSDFVAEETEELLTDELMAKYRQSDDHMTVVKEEAADSTDDYNMEMKQENDTSNYSQSGKKLNDKQLYHFSARNVDVTNQSIQDEDTSEYDKGSTNRIDYDSVIIFVCPACGLEIESQSKWKAHIDYVHKYSTRRGLNFMQIDKLYHQCLECNRNIAMHSMENLLKHKFTHLPYKRVKCKLCSKQYKYRQDIMVHLRMTHREELINTNTSIRTRASISRNESISNLSTNFEIKNVRENAVDIFESTVEGVQVKSEPIVDNEDDEELTSSADNQLINVTLDESLSQSSSHLSDTSTLQRKVSLSKEELCERLYIQYICPKCGEEFPKQSQWQQHIEYVHSFDTRKGLNFNLLNAKQHTQCLECGRVLSNNAIRNMQKHKFTHLPYRSWLRCKLCFRTFMGNKEIVKHLLTQHRLCEEVEANSDSHDGLAGDDEQESGTVDGQALEQSRDERPNDNFEPHIDYMCPQCGKEYFDKRLWRKHIVKVHHLTDMKVLNFKVVSCREVMCLECGKIITNAYGVQNAQQHKFTHLPYKSYVRCRLCNKSYTDRKGIVKHLKSKHRLGDEEAPQSLSYSPPVQEASSLPVQKEIVKHEDYTFEIKYLNDEDDVNDTLDDDTPVPELNFSASYSQFPSLQCKQCTLVFARQAELQAHINEEHEFLDFNNLRPLPEGPRPSYRNNIADVSSAKVPPTIQERPFHLALSSQKDEEEKSSKSYNGWPSVTLGAKSDDFLNSTESNNDLLVPTGDVELNSFSEVVGIEKNFCYLCPNCGLECATQMLWRRHINDVHNYDKRDALNFRQLHKFRYKCLECNDVVSGTKLKGLQDHKFRHLAHRLYIKCIICGTCYNHKPNMISHLRQRHNIIDTRTPLEGANEQLKTVSPLKRITSTATSITEAASSTASLPKLQPIPKTIGDDSLNNHNAVDHEAITYFCPQCNENFGSHLLWRKHIVDVHNFNNKQGLNFRQIDEHHFLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPYNSFKCTTCNTEFVRKQMFFKHLNKVTNECDSKVFAVQREESKKLPLRQQKANVNANVSVVDNSCFMNTWESNYQDCFVLLCPQCGQQFVSQRQWREHINKAHDFIKRETLNFKKLNSNLHECQQCLEHVSGNKLRDLQIHKFKHLPFGTYIQCRYCSASYTHMRNILEHLKLKHRNIIDKINADFDEITFPDDETNGFEASESYLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -