Tatr003402.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000009.1:323138-326671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 2.6e+02 3.2 0.2 3 20 260 283 258 287 0.75 2 13 0.01 1.5 10.2 0.4 1 23 293 316 293 316 0.93 3 13 2.9 4.3e+02 2.5 0.1 3 12 330 339 329 346 0.86 4 13 0.31 46 5.5 2.5 2 16 356 370 355 380 0.75 5 13 8.4e-06 0.0012 19.9 0.5 2 23 388 409 387 409 0.96 6 13 0.00028 0.041 15.1 0.5 3 23 417 438 417 438 0.95 7 13 0.0018 0.27 12.5 3.4 3 23 446 467 444 467 0.95 8 13 0.0045 0.66 11.3 0.6 2 21 480 499 479 500 0.94 9 13 6.1e-05 0.0089 17.2 2.0 1 23 524 546 524 546 0.98 10 13 1.5e-05 0.0022 19.1 0.6 1 23 553 576 553 576 0.96 11 13 1e-06 0.00015 22.8 2.3 1 23 582 604 582 604 0.97 12 13 0.0015 0.22 12.8 1.1 2 23 610 634 609 634 0.95 13 13 0.0003 0.044 15.0 1.9 1 23 637 659 637 659 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGTGTTCCTAGTTTAGAAGCCTGTCGAGTTTGTGCCAACTTCTATGTCACCAGCGGGGAGGTGGATCTGTTGAATCTCTTCGATGCCAATCCGTCACTACAGAAAGAATTGGTATTTATTGCATCTGAGCTTAAGGCGTGGCAATTGAATATATCTTGTAATGATGGACTTCCGCAACGAATTTGTGGTAACTGCTTTACTAAGTTCTGCGGTATTTATTCCTTCCGCGCTGAGTGCTTAGAGGCCCAGGAGAAACTGCTGCAGGCTTTTGTAGAAGGTGATTGTGCAGAGGAAATAGTAACCGCTCAAGAGACGATCTTAAATGAATTGCTTCCAATGGATTTACCAGTTGGGAGCGAGGAGATTGTAGGCTTAGACAGCATGCTAGGAGTTCATACTGACAATATTATGCAATATACTGCTAAACCCGAAGAAATGAAAAATGAAGTTAATGCGGAAGCGTCAGATTGTAACGGATTGTTGCCAGTTTCTCCAATTCCGAACGCTAAAGATCAAGCTATGTCAGAAAATTTTTTCCAAAATATATCGGAAAATATGAAGGTTGAAACCACAACGCAGGATTTACAATATGGATTTCCGGAGGATTTTGAAGAAATACTTCAAGGAAATTACATTCCGAAACAAATAAAAACTGCTGACGAAAACGCCGATTTTAATAACGATGGTTTGAGCTATAATTCAGATGTGTCATCAGTATTTGAAGAAGAGAACTCTTCTCTTCAAGCCGGCTCCGCTCTAAATCCGCTGGCGTGTCAATATTGTTATGCTAAAAAAGACCAGCTTAAAACGTTTTCCTCAGCCGAGGCTTTGTCGCAGCATTTCTTCGATGCGCACGATCCTACATTTCCATACACTTGTCCGGAGTGCCCACTAAAGTTTGTTAACGAAAAGCTGCGCTTACTCCATGTTAAACAAAAACACCAAACTAAATACCAGCAGATCCAGCAAAAGGAACGTTTGTGTCAGTACTGCGGCAAACCGCTGCGAGACACGACCCGCGAAGAGCATATGGAGCATTGCCGATATTTGGGAGACTGGGAATGTGATGATTGTGGCCTAAAGTTCACCCAAGTGACGCATTATACTTTCAAAGCTCATGTGCAGCGTGAACATTCCGCAGTGAAGAAACAACTGAAATGTAAAGAATGCGGACGCGTCTTTTCACAGCGAACTCTTTGGGAAAATCATTTACAATTACACGCCAAAAACACTGTTTTGTGGTGCAATGAGTGCAAAGAGGCGTTCGCAGATGCGTACGAGTTGAAGAAACATAAATATAAAATGCATAACGGTGAATTGCCCGTCAACTGTGATTACTGTAAAAAAGGCTTCGTTACCTACGCTTTTTTGCATCGACATATACAGCATTTCCATCCGGAGAAATTGAATGATGGAAATCACATCGACATGACCTGCAGAAATTGTGGTACGGAGTTTAACTCGCTAATTAAGCTGCGCAATCACCAACAGAAGCCACTCGATGAAAATGGTCGCTGCACGGCGATACCTCAAGTGCAGCGCAAGGTGGCGCGTGTAGGCATATTTCCATGTGAGATTTGCTCACGGCGTTTTCACGTGAAGGCTTACTTAGACAAACATATGCGCTCACACGAAATCGCTAAGCAGACGTATCAATGCAAAGTGTGTCAAGTAATGTTTCGGTCGCCGTCAGAGTTAAAGCTACACCATGAAATCGCGCACCTACACATCAAGCACTTCGTTTGTGATCATTGTGGGAAGAAATTCGCCTATAAGAAGGACTTACGCGACCATATGATATATCACGAAGTGAATAACATGCGCTGCCCTGAGCCGAAATGTGGTCAAAATTGCAAGAACGAGAAACTTCTTAATGACCACATTCGCCAAAACCATCGACTGTTTCCCTGTAAATATTGCAACGAAACTTTCACTCAGTACCGTTTAATACAACACATGCAAAATAATCACAAAATCGAAATAGATGCCGATGATTCATCGCAATCCTATAGTGATGTAAGTGAAGCATTTGGAAACGTAATGGGAAATGGTATCGATGCAGTTGGTGGAGATGTGCCAATGGTCACTGGTGTCACTGGAGATGCTGATGTTGCAGTCAACGCGGAGAATGTTCGTTCAGCTCAGGAAAAAGTAGTCGTTGAATTCGTTGGCAATCTACCATCGAATGATATAAATTTACAAGATCAATTGGGTCATCAGTATCCGATTACGGACGGTTCTATTTACAATCCATTCGAAGATTACGCAGCGGAGTTGATAGTAGAGCAGGAAAATGATATTGATGTAACATAG
- Protein Sequence
- MESVPSLEACRVCANFYVTSGEVDLLNLFDANPSLQKELVFIASELKAWQLNISCNDGLPQRICGNCFTKFCGIYSFRAECLEAQEKLLQAFVEGDCAEEIVTAQETILNELLPMDLPVGSEEIVGLDSMLGVHTDNIMQYTAKPEEMKNEVNAEASDCNGLLPVSPIPNAKDQAMSENFFQNISENMKVETTTQDLQYGFPEDFEEILQGNYIPKQIKTADENADFNNDGLSYNSDVSSVFEEENSSLQAGSALNPLACQYCYAKKDQLKTFSSAEALSQHFFDAHDPTFPYTCPECPLKFVNEKLRLLHVKQKHQTKYQQIQQKERLCQYCGKPLRDTTREEHMEHCRYLGDWECDDCGLKFTQVTHYTFKAHVQREHSAVKKQLKCKECGRVFSQRTLWENHLQLHAKNTVLWCNECKEAFADAYELKKHKYKMHNGELPVNCDYCKKGFVTYAFLHRHIQHFHPEKLNDGNHIDMTCRNCGTEFNSLIKLRNHQQKPLDENGRCTAIPQVQRKVARVGIFPCEICSRRFHVKAYLDKHMRSHEIAKQTYQCKVCQVMFRSPSELKLHHEIAHLHIKHFVCDHCGKKFAYKKDLRDHMIYHEVNNMRCPEPKCGQNCKNEKLLNDHIRQNHRLFPCKYCNETFTQYRLIQHMQNNHKIEIDADDSSQSYSDVSEAFGNVMGNGIDAVGGDVPMVTGVTGDADVAVNAENVRSAQEKVVVEFVGNLPSNDINLQDQLGHQYPITDGSIYNPFEDYAAELIVEQENDIDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -