Tatr008690.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Thecophora atra
Gene Symbol
-
Assembly
GCA_937641085.1
Location
CALMRH010000024.1:1547419-1552587[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00018 0.027 15.7 1.0 1 23 266 288 266 288 0.97
2 28 2.4e-06 0.00035 21.6 1.0 1 23 294 316 294 316 0.99
3 28 0.0054 0.79 11.1 1.5 2 23 352 373 351 373 0.97
4 28 0.016 2.3 9.6 1.5 1 23 449 472 449 472 0.95
5 28 2.5 3.7e+02 2.7 1.4 1 22 479 500 479 500 0.85
6 28 2 3e+02 3.0 4.3 2 23 550 571 549 571 0.95
7 28 0.0005 0.074 14.3 0.4 2 20 609 627 608 630 0.93
8 28 0.11 16 7.0 0.7 1 23 712 735 712 735 0.90
9 28 0.012 1.8 9.9 3.1 1 22 743 764 743 764 0.96
10 28 2.6 3.8e+02 2.6 0.5 2 23 774 796 773 796 0.93
11 28 0.0044 0.65 11.3 2.0 2 21 813 832 812 834 0.93
12 28 1.7e-07 2.5e-05 25.2 0.4 1 23 841 863 841 863 0.99
13 28 2.4 3.5e+02 2.7 2.7 2 23 902 923 901 923 0.86
14 28 0.00055 0.081 14.2 1.8 1 23 1008 1031 1008 1031 0.97
15 28 0.0039 0.57 11.5 0.2 1 22 1038 1059 1038 1059 0.94
16 28 0.03 4.4 8.7 1.7 1 23 1068 1091 1068 1091 0.95
17 28 0.0024 0.35 12.2 0.9 1 23 1106 1128 1106 1128 0.92
18 28 0.00018 0.026 15.7 1.5 2 23 1136 1157 1135 1157 0.97
19 28 0.21 31 6.1 0.1 3 20 1185 1202 1183 1204 0.92
20 28 0.002 0.29 12.4 0.1 1 23 1270 1293 1270 1293 0.97
21 28 3.5 5.1e+02 2.2 1.4 2 22 1301 1321 1301 1321 0.94
22 28 0.44 65 5.1 2.7 3 21 1332 1350 1330 1353 0.92
23 28 0.00076 0.11 13.7 4.3 1 23 1373 1396 1373 1396 0.98
24 28 1.2e-05 0.0018 19.4 0.2 2 23 1431 1452 1430 1452 0.95
25 28 0.00071 0.1 13.8 3.0 1 23 1458 1480 1458 1480 0.99
26 28 2.1e-07 3e-05 25.0 3.3 1 23 1486 1508 1486 1508 0.98
27 28 1.8e-07 2.6e-05 25.2 2.4 1 23 1514 1536 1514 1536 0.99
28 28 0.0012 0.17 13.2 0.1 1 22 1542 1563 1542 1566 0.90

Sequence Information

Coding Sequence
ATGGGCTCAGAATTGGATTATTTGCGTTGTAACTCCAAGTCAATTTGTCGAACTTGTTATGAGATTAGTTTACATCTCCATCCGCTCCACGAGAAGACCGAACAGTTCCCGTTGAAGTCACTGGCTGACCTTTTGTTTGAAATAACTAAAATTGATACAAAACAACATATCACCGAAGAACATATGCCAACGCAGCTTTGCGGAAACTGTTCCAGAAAACTTAAAAATGCCTACAAGTTTGTACAAACGGCGCAAGAAGTTAATGAACGATTGCTTCATTATAGGCAAACGATGAATACGCTCTCTAATGAATATGGTGCGCCTAGTGAAACCAAACATTTGGATTGCCTCATAGAAGCTCCAATAGATATACCTTCAAATACTGGAGACTATCTTAAAATCAAAACGGAAACAGAGAATATAGAAGATACGATTTTCAACTCGGTTTCTCTACCGGATAATGTGGGAATTATCGTAGAGAAACCTGCTGAAGAAGACCATGAGGTAAAGGATGTTCTTGGTAATTTTGACTATGAAGGAGAGTATTCCGTTACAACTGTAGAGAACACAGATGGTACACATTCCACATTCCAGCTAAAAGATGAAGTACACATCAGCGAAAACATTATAAACGATTTAAAAGACCCTATTAAAACAGTTAATAATAAACTTCAAAGTTTGCCGCAAATCGAATGTGAAAGCACCTGTAATGACTCTGATAGTGATTGGGTAGAAATACCTAAGCAACGACGAAGTGCACGCAATCGCAAAAAGAACTACGATTACAAAGGACGATATTCGTGTAGAGATTGTGGCAAAACGTTCGCTTGGAAAAAGGATCTGACGCGCCATTCTTTAAGTCACAATCCAAATCCAGCGTATCAGTGCGATTTATGTCCGCGAAATTTTACGCGCAAGGATAAACTGAATGATCATTTAAAAGTCCATCAGCGAATTAAGGAAGAAGGTGGTCAGTTTTTTGGAGGGCGAATGCGGCATTCAGAATGGAACTTTGCTGAGCGCCTCTATTCAAGAAAGCCTTTTAAGAGAATTGAATGTAAATTGTGTACTATTGACTTTGAATCGACGCATCAGTTGCGCTCTCATCTTAACAGTCACACAGACCGATCCACGCTAGATATGTTGCATATGGATAGTGATGTTATTAAGCTTTTGTATCCAAATACGATTCGAGATTTAAATGAACTTAAAGAACAAATTTGGCAAGACATATCAGCCCAGCGTTTTGGCCAATTTTACGATGTAGTTAATGAATATGGTTATGAGCTCAGTTTAAGTGATTCCGATGAGGATGAGGACGCGCTTAGCTTACCAAAGGTTAAATATAATTGTGAGTTATGTTCTGAAACATTCACTCGAAAATTTAAGGCATTCGATCACTTAAAGGAAATGCATGCTAACGACAATTTACCGTACAAGTGCAACGTTTGTAAAGTTGAATTTATTTGCCGCGAGATGTTCGACGTCCATACACGAACTCTATGCAGAAATAAGGCGAAGAAATATCAATGCTTAAATTGTCCTGGTAAATTCATGTTTCTAAAGAATTTAGATGATCACAACTGCCCCAATAAAGTTAACAGCGCTGAGTATAAATCACAGATTCTGAAAAAACATGATGTCTTAAATTGTACTGAGTGTGCAAAGTCATTTCTTTGCCGCAAAGACTTGCGGAGACACAAACAGACTCATGATTCTGCCGAGACTTTATTAGAATGTACAATTTGTTGTCAACGGTTTTTAATAAGTAACGACTTAAGGCTTCACTACAAACAGATTCATAAGCAGCTTCGGCGGCGCATTGAGTGTTCTTTATGCCCTCAGACATTCAGTTCACTTAAACAACTGCGAAAACATTTACCCCTCCACGCTGACGGTTCTACGGGAATAATTATGGAGAGTAGTCGTTTTTTCAAAACGTTTTCATCATTATTTAGTAAAGATTCTTCAGGATCACACGCATTTAATAGCGCACAAATAATACGTGAAGGATTTAAATCGCAGACTATTGCTCGTTTTTATTTGGCCGTGGATGAAAGTGGCAATGAATTGGATTTGTGTGATTCGGAAACAGATGTCGAAGTGGCTTCCGATGATCATCATAACGTTTGCTATAAATGTGAAATATGTCTAAAGGAATTCGACAAGCGAAAAAAAATCCTCCTGCATCAATATGCTGAGCATGAGTTATTGAAAACGTTGCCATATCATTGCGAAAAGTGTGATAAGCAGTTTGTGTGTCGCGAGTTATTGCAAAAACATATCAACACTGATTGCAGCAATATTTATAAGAATTGGAACTGCAGCAAATGTTCTTCGCGATTTGTATGGGAGGAGAACTATAAAGTTCATCTAAGTATGAAGCATGAAGACGCCGAACAACAAATCAACAATCGGAAATTGGCGAACAAGTTGCAGTGTGATGAGTGTGATAAGACTTTTATATGGCCGAAGGATTTGAACCGTCACAAGCGATGTCACCTTCCGGAAGATGAGAAGTATGAGTGCCCCTTATGTCCGCGACGATTTAATCGAAAAGACAACATGCAAGCACACATGAAGGTTCACGGCGCTACGGAAGCAGGCTCGCTCCTCCGAAAGGATGTTGCCAGAATCGGTAAACAACCAAAAGTAAAAGCTGTCGATGAGAATCTATGCAAGCCCAATGGTTGCAAACTTATTCAGTGCATGATTTGCTTTTCTAAGCACACGAAAATTTCTGATTTGCGTACTCATTTGCGTACACATCAGTACGTAGTGTCGCTGGCTCAACGCGGGCAGGATGAAGACATTTCCGACATTTCCTTGCAGCTATATCCGAACGAAGAGCCGCCGCTTGAGCAAGAGCAACTCCTGATGAAGCGTATTATGGGCGATGTCAGTGAGCGTAAATGGGATCGCTTTTATTCCATCACAAATGAAGTCGGTTATGAGATGGACATCAGTGATTCTGAAACCGAAAGTGATTCAGAGGAAGAACAGGAAACTGCTCGTCGCTCATACACGTGCGAGTTGTGTGCGAAGGGATTCGACAGGAAATATAAACTATTTGAACATCAAAAGTATATGCACGAGTGGTTTGATCTGCCGCATGCTTGCAATGTTTGTGACGCTAGATTTGCATCAGCACAATTTTTGCAAATTCATCAAAAAACCCTCTGCCAAAATTACCAAAAACATTTCCTTTGCAAGAAATGTCCCTTAAAGTTCATGTGGAAGAATAATCTAAAAACTCACGAACGCACTCTTCATCCGGAAAAAATCGATTTAAAAAGAAAGTTCGAAGCCAATCGATACGAATGCCAGGAATGTAATCGTACTTTTGCATGGCAGAAAGATTTGACAAGACATTTTGTTCAACACCAACCGGAATCACAAGCTTTAACCTGCTTTTGGTGTCCTCGTAGGTTTTATCGCAAGGATAAACTTTATGTCCATATTAAGCGCCATAATGTCACGCCTCAGTGCCTGGCTGCTGCTGAAAGTTATGCAAGGGCAACCAATGGACCAAATGGCAAAAAAGAAATCTTCTGTAAAGTTTGTGATAAGAAATATTTGAGTATTTCTGCTTTGCGCACACATTTGCTGCAGAGTACTGTCGATGGCAGCTTGAGCAACTTGGATAATCTAGAAAAACTAGAACCATCCCTTCAACAGCATCATAGCTATCGTTCATTACTGAACTATTCTATAACAAATGAACTTGGCTTCGAGTTACATATAGACGATTCGGAATCAGATACCGAAGGTGCTGTAATTCCTAAAGCGCCGGGCACTCCTCTTAAATACAATTGTGAATTGTGCGTAGTGGATTTTCCACGGAAATACGAGTTAGCCCAGCATCAAATTACGGCTCATCCGAATGAACAAATGCCGCGCAAATGCGAGAAATGTTTCTTTCGAACGGCCTCAAAGgatattttagatcatcatatgcgcactcaatgtttcaacttggaaaaagaacatttgtgcaaaatatgttcgatgaagtttatgtggcaagagaatctcaataGGCACATCCAGTGCATTCACCCACAAGATACTCGCCCGAAAGAGGATGTGTCGCCAAAGTTGAAGCTGAAAAGATCATTTCAATGTGATCTCTGTAAGTGCAAGTATAACAGGAAGGATCGGCTCACGGCTCACATTAGGAAAATGCACACGAAAGGTGTACAGGTTGATAAACCAGCCAGTGATGCTTCgcaagtcgatcccgttactggcgaacacgtacacaacaaacctcagctggagaaaaaatttctctgtgcattttgcggccgtgctgtcacgtcgtcatctaatctaattattcacatgcgtcgtcacaccggcgagaagcctttcaaatgtgacttctgtgagatggcttttccacgttcttccgacttgcaatgccatcgacgcacacacaccggagaaaagccgcacaaatgtagcgtctgcgacaaggctttctcgcgctcctacaagctgcagacccacatgcgtatacactccggcgaacgtccgtacaagtgcacatactgtgagaagagttttacgcagtcgaacgatttaacattacacatacggcggcacactggagagcggccgtacgtgtgcggcatctgtggcgaacgtttcatacaaggcacggcgcttaagaaccatcgtacaatgcgtggccactatgaggatgtaGAACCGAGGAAATTGACCGTTTTGGAGCAATTTTAG
Protein Sequence
MGSELDYLRCNSKSICRTCYEISLHLHPLHEKTEQFPLKSLADLLFEITKIDTKQHITEEHMPTQLCGNCSRKLKNAYKFVQTAQEVNERLLHYRQTMNTLSNEYGAPSETKHLDCLIEAPIDIPSNTGDYLKIKTETENIEDTIFNSVSLPDNVGIIVEKPAEEDHEVKDVLGNFDYEGEYSVTTVENTDGTHSTFQLKDEVHISENIINDLKDPIKTVNNKLQSLPQIECESTCNDSDSDWVEIPKQRRSARNRKKNYDYKGRYSCRDCGKTFAWKKDLTRHSLSHNPNPAYQCDLCPRNFTRKDKLNDHLKVHQRIKEEGGQFFGGRMRHSEWNFAERLYSRKPFKRIECKLCTIDFESTHQLRSHLNSHTDRSTLDMLHMDSDVIKLLYPNTIRDLNELKEQIWQDISAQRFGQFYDVVNEYGYELSLSDSDEDEDALSLPKVKYNCELCSETFTRKFKAFDHLKEMHANDNLPYKCNVCKVEFICREMFDVHTRTLCRNKAKKYQCLNCPGKFMFLKNLDDHNCPNKVNSAEYKSQILKKHDVLNCTECAKSFLCRKDLRRHKQTHDSAETLLECTICCQRFLISNDLRLHYKQIHKQLRRRIECSLCPQTFSSLKQLRKHLPLHADGSTGIIMESSRFFKTFSSLFSKDSSGSHAFNSAQIIREGFKSQTIARFYLAVDESGNELDLCDSETDVEVASDDHHNVCYKCEICLKEFDKRKKILLHQYAEHELLKTLPYHCEKCDKQFVCRELLQKHINTDCSNIYKNWNCSKCSSRFVWEENYKVHLSMKHEDAEQQINNRKLANKLQCDECDKTFIWPKDLNRHKRCHLPEDEKYECPLCPRRFNRKDNMQAHMKVHGATEAGSLLRKDVARIGKQPKVKAVDENLCKPNGCKLIQCMICFSKHTKISDLRTHLRTHQYVVSLAQRGQDEDISDISLQLYPNEEPPLEQEQLLMKRIMGDVSERKWDRFYSITNEVGYEMDISDSETESDSEEEQETARRSYTCELCAKGFDRKYKLFEHQKYMHEWFDLPHACNVCDARFASAQFLQIHQKTLCQNYQKHFLCKKCPLKFMWKNNLKTHERTLHPEKIDLKRKFEANRYECQECNRTFAWQKDLTRHFVQHQPESQALTCFWCPRRFYRKDKLYVHIKRHNVTPQCLAAAESYARATNGPNGKKEIFCKVCDKKYLSISALRTHLLQSTVDGSLSNLDNLEKLEPSLQQHHSYRSLLNYSITNELGFELHIDDSESDTEGAVIPKAPGTPLKYNCELCVVDFPRKYELAQHQITAHPNEQMPRKCEKCFFRTASKDILDHHMRTQCFNLEKEHLCKICSMKFMWQENLNRHIQCIHPQDTRPKEDVSPKLKLKRSFQCDLCKCKYNRKDRLTAHIRKMHTKGVQVDKPASDASQVDPVTGEHVHNKPQLEKKFLCAFCGRAVTSSSNLIIHMRRHTGEKPFKCDFCEMAFPRSSDLQCHRRTHTGEKPHKCSVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDVEPRKLTVLEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-