Tatr014550.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000034.1:1553132-1556739[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0084 16 6.4 0.3 16 39 124 148 116 152 0.84 2 10 0.044 86 4.0 0.3 17 28 153 164 148 176 0.72 3 10 0.0085 17 6.3 0.3 5 33 170 195 166 199 0.70 4 10 0.0031 6.1 7.7 0.7 10 39 203 228 197 235 0.76 5 10 0.16 3.1e+02 2.3 0.6 15 29 235 249 223 261 0.76 6 10 1.4e-05 0.027 15.3 1.3 15 39 349 374 342 377 0.88 7 10 0.15 2.9e+02 2.3 1.2 14 27 376 389 374 401 0.79 8 10 0.0029 5.8 7.8 0.6 14 36 404 424 396 425 0.76 9 10 0.0035 6.8 7.6 1.0 10 39 429 454 423 458 0.73 10 10 0.043 83 4.1 5.2 4 38 451 489 448 490 0.85
Sequence Information
- Coding Sequence
- ATGCTTTCCTCATATTCACAGTCAAAACCCAAAACAGCAGAAGTCAATACTAGTTGTTTCGATGAAGAACCTGAAATATATTTCGATGTGCACAAAGAAATTACGGATGAAGACCCAGAGAAACTAGATTTGCTGACAAATGGCAATGATACAGATGATGACCAAGTGAACGTCGATATGTTGACAGATGGCAGTGATACAGATGACGACCAAATGAAACTGGATATGCTGACAAATAGCATAGATGCAGATAATATTTTTGAAGAATGTGCAGATTCCCTGAGCGGGACAACATCCGATTCCGAGGTCCGTCCAACATCCGATTCCGAGCACCGTCCAAAACGATCGAAAAAAAAGAAAGTAGATGACCAAATTATGTGCGATATTTGTGGAAACATATACCCAACGCTTGGCAAACTCACTATGCATATGCGTCGACATATGCCTGAAAAACCATTTCAATGCGAaatttgtggcaaaacgtttattgctccatcggaagttcgacgtcacatgcgtgtgcacactggtgaaaaaccgttcgtttgtaaattttgtggtcaaatttttgctgatcGTAGCACAAATATAAAACATGAAAGGATTCATACTAAAGAACGTCCGTTCATATGTAATAGCTGTGGTAAGGCTTTTACATATTCCAATGTTTTGAAAGATCACATGTTAACACATACAGGAGAAAAGCCGTACAGTTGTGCAATATGTAAAACGACATTTACACGAAAGTTTCAACTTAATAAGCACTACGCAACACGGACGCACGAGAACTCAATACAAAAAATCAAATCGCTCAATAATAAAAGTAAAGTCATGCTATTAGAAGCGGAAAATAATGTTTGCACTGAAAAACATAATCGATTTGCATGCGTGATCAATGCAAAACGACTGGACCGGGAGATGCTGTCAAATCAGAAAGCTTTCGATAATCAGTTAGAAGAAATGTGTCGAGATGAAGGCATGTCGCCAAATGTAACTATGGCGAACAACTCAAATAAGCAGACAAGGAAGCGAGCTAAAGTGCACGACCAAATTGTATGTGATATTTGCGGAAACATCTATTCAACACGTGCCAACCTTACTATGCATATGCGTCGGCATATGCCTGAAAAAGCTTTCGAGTGCAAAATTTGTACCAAATCTTTTGCTTGTCCATTGGGAATTcaacgtcacatgcgggtccacactggtgagaagccgttcgtttgccaatactgcggtcgatctttttctgatcATACTACAAATATAAAACATGAAAGgattcatactaaggagcgtccgtatacttgtaatacttgcggtaaggcatttgcctactccgatgtgctgaaaaatcacatgctcacacatacgggcgaaaagccttTCAGCTGCAGTATTTGCAAATCAACGTTCACACGAAAGTTTCAACTCAAAAAGCACTACTCTACACGTATGCATCGGCACAAAATAAACCTCACAACCAATTCGGAAACAAAGGAAACAATACTATCAACCCCGTGA
- Protein Sequence
- MLSSYSQSKPKTAEVNTSCFDEEPEIYFDVHKEITDEDPEKLDLLTNGNDTDDDQVNVDMLTDGSDTDDDQMKLDMLTNSIDADNIFEECADSLSGTTSDSEVRPTSDSEHRPKRSKKKKVDDQIMCDICGNIYPTLGKLTMHMRRHMPEKPFQCEICGKTFIAPSEVRRHMRVHTGEKPFVCKFCGQIFADRSTNIKHERIHTKERPFICNSCGKAFTYSNVLKDHMLTHTGEKPYSCAICKTTFTRKFQLNKHYATRTHENSIQKIKSLNNKSKVMLLEAENNVCTEKHNRFACVINAKRLDREMLSNQKAFDNQLEEMCRDEGMSPNVTMANNSNKQTRKRAKVHDQIVCDICGNIYSTRANLTMHMRRHMPEKAFECKICTKSFACPLGIQRHMRVHTGEKPFVCQYCGRSFSDHTTNIKHERIHTKERPYTCNTCGKAFAYSDVLKNHMLTHTGEKPFSCSICKSTFTRKFQLKKHYSTRMHRHKINLTTNSETKETILSTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426947;
- 90% Identity
- iTF_01426947;
- 80% Identity
- iTF_01426947;