Tatr023367.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- bab1
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000077.1:817995-820048[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-11 5.5e-08 33.2 0.0 3 45 410 452 408 452 0.90 2 2 4.6 1.8e+04 -3.7 1.2 4 18 538 551 538 553 0.81
Sequence Information
- Coding Sequence
- ATGAGGACGCCGTCGCCCCTGCCGCCACCGCCGCCGGGTGGCGTCGACTGCCAGACGTACTGCCTGCGCTGGAACAACCACAAGGCGAACCTCATCGAGATCCTCGACGCACTCATCAAGGTCGAGAGCTACGTCGACTGCACCATCATCGTGGACGACCAGGTGCAGTTCAAGGCGCACCGCGTCGTCCTGGCCGCCAACTCGCCCTACTTCCAGTCCATCCTGCAGGGCGTGCCCATGGACCACTGCAGCATCATCTTCCCCGGCGTGCAGGCCTTCGAGATGCGCGCCCTGCTCGAGTACATGTACACGGGCGAGGTGAACGTCACGCAGAACCAGATCCCGCAGATCATGCGCATCGCAGAGCAGCTCGAGGTCAAGGGCCTCTTCGACATGACAGACCTCAAGGAGAAGTTCAACAAGCTGGGCGAGGAGCCGGCAGCGGAGCCCGCTGTGTACCCGTACGCCTGCCCGCCGTCGGCCGGCCCCGTTGCGCCCTTCACTGCGGCCGCCACCTCCTCCACAGCGCCGCACAACGGGTCGCACGACGCCTCCGTGCACTCCTCCTCCGTGATCTCGACGTCCAGCAACATCTCGCCGCCGCCAGCCGCGCCCTCCAGCAGCTCCTCGCCGCCCTACGGCAGCTACAAGGCGCTGTACGCGAACATGTACACGACCTCGGGCGTGGGCGCACCGCCGACAGCAGCCGCCCCGCTGCCAGCACAGACGCCAACCACGCAGCCAACGCCGCCGGGCGCCAGCAGCGAGCGCGCTCCGTGGCCGATCTCACCGGCGGCCATGCTCAGTGCCGTGTACGAGTCCGCGCCCGACATGAACCCGCTCAAGCGCAAGAAGCTCTCCTCCATCTCGAGCATGCTGATGAGCCGCGGCGACACGCCCATCCTGCGCAACGTGCTGGCGCAGCCCAGCGTCCCCGACTCCTCGCAGCCGCAGCCGCTGCCGCTGATGCTGCCGGGTGCAGCGATGGGCGACAAGCCGCCCGCGGACAAATCCACGCCGCACAACAACAACCACAGCTTCAACGGATCGGACTACAGCGTCGACAAGAAGTACAACGAGGAGCCGCACTCGCCGTTCACAGATCGCTCCTTCGACGACGACAGCTTCGAGCCCAAGGGCAACTTCAGCGGCAGCTTCGGCGCAAACGCCAACGCCGGCGCCGGCGGCCAGAAGCCGGAGTGGAAGCGCTACAAGCAGTACACGCGCAACGACATCATGTCGGCGATTCAGTGCGTGCGCGACGGGATGAGTGCGCTGCAGGCGTCGCGCAAGTTCGGCGTGCCGTCGCGCACGCTCTACGACAAGGTCAAGAAGCTGGGCATCACCACCGGCCGGCCCATGAACCGCAGCATGAAGCGCAGCCCGAGCAGCGTCGAGTCGGCCGCCTTCCCCTACGCCCACGGCTACGGGCAGTCCGAGCAGCTGCTGGCGTCGCTGCACGAGGAGCGCGAGCTGCCCAAAGAGCACCAGCTGCAGCACGCCACCAACATCCCGCACCAAGCCGCCGCCCTCCTGGACCACGCCCTGCTGCAGCAGGCACTCGAGAGCCGCGGCGGCGACATCGCCGGCCGCGAGGCGCTCCATGCGATGGCCCTGGCTGCGGCCGCCCACGCCGCCGTCAACCGCATGTCCGCCAGCCCGGGGCCCAACGGCACCGCTGCCCGCTCGCCCAGCCCCAGCTTCGGCCTGAAGTACGGCCGCAACGAGCACGAGCTGCTGCTGGAGCGCGAGCAGGAGCGCCGCCAGCAGGAGCGCGCCGATCTGCTGAATGACCACGAGCGCGATCGCAACCGCGACGCCGACGATGAGGGCGACCACGTCGAGGACCTTTCAGTGACGCGCAAGGACGTCCGCGGCGCCGAGACCTGCGGCGTCATCGTGCCGCCGATGCACACGAAGCTGGCCGGCTTCTCGCCGCTCGCCGAGGCCGACGTCAAGCAGGAAGTCGGCAGCGAGCAACGCCGCGCCGACTGA
- Protein Sequence
- MRTPSPLPPPPPGGVDCQTYCLRWNNHKANLIEILDALIKVESYVDCTIIVDDQVQFKAHRVVLAANSPYFQSILQGVPMDHCSIIFPGVQAFEMRALLEYMYTGEVNVTQNQIPQIMRIAEQLEVKGLFDMTDLKEKFNKLGEEPAAEPAVYPYACPPSAGPVAPFTAAATSSTAPHNGSHDASVHSSSVISTSSNISPPPAAPSSSSSPPYGSYKALYANMYTTSGVGAPPTAAAPLPAQTPTTQPTPPGASSERAPWPISPAAMLSAVYESAPDMNPLKRKKLSSISSMLMSRGDTPILRNVLAQPSVPDSSQPQPLPLMLPGAAMGDKPPADKSTPHNNNHSFNGSDYSVDKKYNEEPHSPFTDRSFDDDSFEPKGNFSGSFGANANAGAGGQKPEWKRYKQYTRNDIMSAIQCVRDGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSMKRSPSSVESAAFPYAHGYGQSEQLLASLHEERELPKEHQLQHATNIPHQAAALLDHALLQQALESRGGDIAGREALHAMALAAAAHAAVNRMSASPGPNGTAARSPSPSFGLKYGRNEHELLLEREQERRQQERADLLNDHERDRNRDADDEGDHVEDLSVTRKDVRGAETCGVIVPPMHTKLAGFSPLAEADVKQEVGSEQRRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426840;
- 90% Identity
- iTF_01426840;
- 80% Identity
- iTF_01426840;