Tatr000293.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- bab1
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000001.1:1704859-1706504[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-18 3.3e-14 53.1 0.0 1 43 56 99 56 101 0.95 2 2 1.4 5.5e+03 -2.0 3.2 3 26 193 219 191 220 0.81
Sequence Information
- Coding Sequence
- ATGCTGGAAAACTCGCACTCTTGGATGGGCGGGGCATCGACCTCCTCCATCGCAGCAGACAGCTATCAGTACCAACTGCAATCCATGTGGCAGAAGTGCTGGAACACCAACCAGAATCTGATGCACCATCTGCGCTTCCGGGAACGCGGCCCCTTGAAGTCCTGGCGCCCCGAAACCATGGCCGAGGCCATCTTCAGCGTGCTAAAGGAAGGTCTGTCGCTGTCGCAAGCCGCCCGCAAGTACGACATCCCGTACCCGACCTTCGTGCTCTACGCGAACCGGGTGCACAATATGTTGGGCCCGTCCATAGACGGGGGCCCGGACTTGCGGCCCAAGGGTCGCGGACGCCCGCAGCGGATCCTGCTCGGCATCTGGCCGGACGAGCACATCAAAGGAGTCATCAAAACGGTGGTCTTCCGCGAGGCCAAGGAGCTGAAGGACGAAGGTTTGTCGCACTTGCCCTACGGCAGGCATTCGCCCGTCTTCCCCTTTCAAGAGGCCCACTTGAACTACCCGGGTGTGAGCGGGCCGTGTCCCAACGGCATGCCCACGCCCACCGGCGATCAGATGTCGCAGGAAGCCACCGCCGCAGCTGTGGCCGCCGTGGCGCACAACCTGCGCCAACAGATGCAGATCGCCGCCGCTGCGCAGCACCACCAGCACCAACATCAGCACGGCGAAGGGCCGCCGGCTGCGGGACTCTTCAATCTCCCGCCCCATCTACAGCCGCATCTTCCTGCCACCCCTGCTCCTGGAGGACACACCGGCCCGAAGTCAAGCGGCTCGCCTGCATCTAGCGCCGGCGCGGCTCTTCTAGCTGCACGTCACGCTCGGTCGCCCTGCGGCGCCGCGTTACCTGGTCTGCCTAGTCTTCCGCCGAGCATGGCCGCCGCTTTGCACATGGCGGGCGCCCGCGAGCCCGGCCCAGCGgcgtctatgttgggccagcaccagcagcagcaacaacagcagctccagcaactgcaaatgcagcagcaacatgcagccctgcaccaacagcaacaacaacatcacccacagcattcgccagctcatttgagccacttccacgcgacagccgcagccgccaatttgcagcgacaccagcagcagtcttcaAGTGCAGGTGCGCATCCCCTAAGAAGCACTTCGCCCTCTGCCGCGTCCAGCAAACACCACAAACCAACATCCCACGGCGAGCACAGGCGCGAGAGTCCGGCCGGCGCTGGGCCGCTTCCTTCCCCGCTCACGGAGATGGGCTTGGAGGCGTCTGTACCGGTCGGCATCAGCGGCATGACTTACAAGCCGTCGCGCGGTTACTCGTCGCCGCGTCCGGAGCACCTCTTCCAGGAGGACATCGCCGACTTAGTGGCTCCCTGTGCTGCGTCAGACGCCGGCGCAACAACGAGCGGCAACTCCGCAGCATCTGCGAAGCTGCCTTCCAACGTGGCAGCAGCAGCGGACGCGTCCAGCAGCACCATCAAAATCGAGCCGATGGCCATGAGTCTTGAATGA
- Protein Sequence
- MLENSHSWMGGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFREAKELKDEGLSHLPYGRHSPVFPFQEAHLNYPGVSGPCPNGMPTPTGDQMSQEATAAAVAAVAHNLRQQMQIAAAAQHHQHQHQHGEGPPAAGLFNLPPHLQPHLPATPAPGGHTGPKSSGSPASSAGAALLAARHARSPCGAALPGLPSLPPSMAAALHMAGAREPGPAASMLGQHQQQQQQQLQQLQMQQQHAALHQQQQQHHPQHSPAHLSHFHATAAAANLQRHQQQSSSAGAHPLRSTSPSAASSKHHKPTSHGEHRRESPAGAGPLPSPLTEMGLEASVPVGISGMTYKPSRGYSSPRPEHLFQEDIADLVAPCAASDAGATTSGNSAASAKLPSNVAAAADASSSTIKIEPMAMSLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022935;
- 90% Identity
- -
- 80% Identity
- -