Tatr012625.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- br
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000030.1:3593219-3594703[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-16 1.5e-12 47.7 0.0 2 44 305 347 304 348 0.96 2 3 0.0052 20 5.7 0.0 27 37 377 387 362 393 0.89 3 3 3.2e-18 1.2e-14 54.4 0.0 2 42 414 454 413 457 0.93
Sequence Information
- Coding Sequence
- ATGAATCACTTAAAATGGATGGGACACCAAGCAACTATCTACGATATTCAGAGAAGTCTACGCACTGATACGCAGAGCTGTGAAGTGACATTGGTAGGACGCGGTAAGTCTGTACGAGCACATCGCTTTGTACTGTCTTCCTGCAGCGATCTGTTACACAACTTGCTAGAAGATGTGCCCGTGGGACAAGACTGCACAATTATGGTTCCAGACGTAAAGGGCTCCCTGTTGGACAGTGTGCTCGCTTTCATATATTTGGGCGAAACATGCCTTAATTCCAACCACTTGTCAGAGTTTCTAGAAGCTATAAATCACTTGGGTATTAAATCTGCCATTAGTTTTGAGTGCAACACGCGTCTGATGGATTCTGGAGCAAATTCTCTGCCGAAGCCTTCTACTGTTATGCACGTGCAACAAGACGAAATCATTGAGGAGGATGAGGTCATGGGATCACCAAAAATGGAGGATGAATCAGTCAATGATGGAAATGATCAACAGTCTACGCGTGAACTGGAATTCCTAGATGTTTACCACGAGCCAGAACAAAAAATCACCTATTCCATAGAACACATGGAAGCTGGCTCAACTAACGAATTCATTTTAACCGAAAGTTCTGGCACCTATACACTCACACAGAACGCAAAGATAGACGATACCGGTAATTTAGAAAAAGTTGAAGAAACTGAAGATGACGATGCTGACGGAACTCAGACCATGATCGAAGAATACAGTACTACGACAGGTGCAGTTTCATCTGAACCCCTAATTGATGTTGGTCAAACTTGTGAAGTGATCAACGCACACACGAACGAAAACATCCACAGCAAACCCGTGTTTATCAAACCTGTGAAAATGGAATTGAAACAGGAACCTAATACGCCTATAAGTATCCTTAACGACAACCAAATTCGCGACGAGAACCTCGACCACGCCGTGCAAGGCGTACTTAATGAGGGTATGAGTTTACAAAAAGCAGCACAAAAATATCGCATCTCCAAAACTGTGCTTTGGCGACGTGTTCGCAAGCATCCCATGTATATGAAGACAACACGCGAAAATCCTATGATTGAAGCGGCTTGTGACCGACTGAGCAATGGCGAATCTTTAAAAGTAGTCAGTCAAGCGCTCGACATACCAATGTCAACGCTGCACCGTCACAAAGTACGCCTTGCGGAACAAGGTCGATTGCCTGACTACGTTACATTTAAGAAACGTGGCTCTATTTCAAAAGAACAACTCCGAGAGAAGCTGGCAAAGGCTGTGCATTCCTGCCTTCATGAAGGAATGTCTCAAAATCACGCAGCTAATATGTACAACATACCTAAGAGTACTCTGTGGAGACATCTGCAGAAGCGGATGCATGATGCGCAAATGCAGGGATTGCTTGATGGGGAGGATGCAATCAAAGAGGAAATTATTTTGTCGTAA
- Protein Sequence
- MNHLKWMGHQATIYDIQRSLRTDTQSCEVTLVGRGKSVRAHRFVLSSCSDLLHNLLEDVPVGQDCTIMVPDVKGSLLDSVLAFIYLGETCLNSNHLSEFLEAINHLGIKSAISFECNTRLMDSGANSLPKPSTVMHVQQDEIIEEDEVMGSPKMEDESVNDGNDQQSTRELEFLDVYHEPEQKITYSIEHMEAGSTNEFILTESSGTYTLTQNAKIDDTGNLEKVEETEDDDADGTQTMIEEYSTTTGAVSSEPLIDVGQTCEVINAHTNENIHSKPVFIKPVKMELKQEPNTPISILNDNQIRDENLDHAVQGVLNEGMSLQKAAQKYRISKTVLWRRVRKHPMYMKTTRENPMIEAACDRLSNGESLKVVSQALDIPMSTLHRHKVRLAEQGRLPDYVTFKKRGSISKEQLREKLAKAVHSCLHEGMSQNHAANMYNIPKSTLWRHLQKRMHDAQMQGLLDGEDAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426900;
- 90% Identity
- iTF_01426900;
- 80% Identity
- iTF_01426900;