Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.88 1.3e+04 -3.0 0.5 6 10 22 26 21 26 0.82

2 6 2.6e-09 3.9e-05 24.3 11.8 1 19 32 50 32 50 0.97

3 6 0.21 3e+03 -1.0 0.6 11 16 81 86 80 87 0.67

4 6 0.00016 2.3 9.0 14.9 1 18 91 108 91 109 0.97

5 6 1.8 2.7e+04 -4.0 1.2 1 3 140 142 140 144 0.53

6 6 0.0026 38 5.1 3.6 1 13 150 166 149 167 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.88	1.3e+04	-3.0	0.5	6	10	22	26	21	26	0.82
2	6	2.6e-09	3.9e-05	24.3	11.8	1	19	32	50	32	50	0.97
3	6	0.21	3e+03	-1.0	0.6	11	16	81	86	80	87	0.67
4	6	0.00016	2.3	9.0	14.9	1	18	91	108	91	109	0.97
5	6	1.8	2.7e+04	-4.0	1.2	1	3	140	142	140	144	0.53
6	6	0.0026	38	5.1	3.6	1	13	150	166	149	167	0.84

Coding Sequence: NNGCGCTGCGGCTGCGGCGCGGAGACCCGATCAGTGTTGTGCAGCAGCAAGTTGCCGCAAGTGTGCAGCCGCGCATGTAACCGCACACTGGAGTGTGGCGTGCACAAGTGCGCTAAGAGTTGCCACGAAGGCAATTGCGATAATTGCACTGAAATTGTCACTCAGGTGTGCTTCTGCCCGGCGGCGAAGTGTCGGTCGGTGCTGTGCACGGCGGAGACGGGACAGAGCGCGCAGTGGACGTGCGAGGGCGAGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCGCTGCCACGCGCCGCCCTGCGAGCCCTGCCACCTGCTGCCGCACCTAGTGCTCACTTGCCCCTGCGGGAAGACACGATTAAACAAAGACTCGCGTAAATCGTGCACCGATGCGATCCCCTTGTGCGGCAACATCTGCGCAAAGCCTCTGCCTTGCGGCCCCGCCGGAGACAGGCACTTCTGCAAGATCAACTGCCATGaaggtaaatattttatatcctaCTAA
Protein Sequence: XRCGCGAETRSVLCSSKLPQVCSRACNRTLECGVHKCAKSCHEGNCDNCTEIVTQVCFCPAAKCRSVLCTAETGQSAQWTCEGECGRVLACGAHVCRARCHAPPCEPCHLLPHLVLTCPCGKTRLNKDSRKSCTDAIPLCGNICAKPLPCGPAGDRHFCKINCHEGKYFISY*

Sequence clustering based on sequence similarity using MMseqs2