Tpit011363.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01011563.1:1-4612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 3.3 9.0 1.7 2 23 21 42 20 42 0.95 2 11 5.1e-05 0.0047 18.0 0.1 3 23 50 71 48 71 0.95 3 11 0.00064 0.06 14.5 2.5 1 23 83 105 83 105 0.99 4 11 0.0099 0.92 10.8 1.9 1 23 111 133 111 133 0.98 5 11 0.015 1.4 10.2 1.3 1 23 140 163 140 163 0.97 6 11 0.078 7.2 8.0 0.9 2 21 172 191 171 192 0.93 7 11 1.1 1.1e+02 4.3 3.6 1 23 293 315 293 316 0.94 8 11 0.0031 0.29 12.4 0.8 1 22 324 345 324 345 0.95 9 11 0.03 2.7 9.3 5.6 1 23 377 400 377 400 0.94 10 11 4.4 4.1e+02 2.5 1.6 2 23 406 427 405 427 0.88 11 11 0.01 0.93 10.8 4.8 1 23 433 456 433 456 0.97
Sequence Information
- Coding Sequence
- NNGTTATCAGCGTACAgcaaaaagacaaaaaagtctgCGTGCAGCAATGCGAAGACCCTTAAATGCGACTCCTGTGATTACACAACCATCTACAAGAACTGTTTGAAAATCCACGTGCAGGGGCACACAGACGCGAAACCACTGGCCTGCGAAGTGTGCGGCTACACGACCAGATATCCCACTTCTCTGAAACGCCACATATTAATTCAACATAATTGCAAGGAAGACGAGAGCGCCCCTCGCGCGTACAAATGCGACCAATGTGAATATTCCACATATTTCAAATGGAATTtgagcgcgcacaaacgcaaaCACAAGCTCGACAAACAATTCAAATGCACTGCGTGCGGTTACGAAACGGCTTATAGGCACAACTTCGTCAAACATGGTAAAGTTCACAAGAAACAAGAGGTTTTGTACAAATGCGACAAGTGCCCGTTTGTGACGAAGTTCGAAGGTCACATCAGCCGGCATTTAGCGAAAATACACAACGAGATATCGGATAAGGCGAACAAGTGTGACCTGTGCGATTTCTCCACTAAAACTAGATGGCGTTTGAACGTACATAAGCAGAGGAGCAAACAGTCTGATCCATTAAAATGTTCCTTTTGTGAATTCCAAACTTTGTTTATGTGCGAAAGTAAGAAACACAAGGTCATACATTGTAATGAAGTGCATCAAAAGGGTGGTACAGAGCAATCTGAAGATGGTGACATAACTCTTCGCCAACTCCGTACGGATACAAGTCAAGACCAACCGCTTAAAGAAATATCACTAACACTACAAGAGAAGGCCAATCATTACGTATTGGACCCAAATTGTGAATTGGAATGGAATTCTATTAAGGTATATGAAGTGCCGAACACAGATCGGCCGTTCCAATGCATCAAGTGTAAATATGCAGCTAAATTCAAAGCGTCCGTGCAACGGCATTACCAAAGACACCACACCGGTAACCAGAAACGACCGTTCAAGTGCACAAATTGTGATTTTACGACTAAAACTAAAGATCAGATCGCTTTGCATATCAAGCGCAGTAAATCTGATACATTACTGCATTGTAACGCATGTGAATTTACAACATACTTCAAGTGCCAATATGTTTCACATCAAAAATGCCACTACCCacataaatgtactatttgcAAATACACTTGCAAACAAAAGTATGAAATACTAAAGCACTTCTCTGTCGCTCATATGGGTAGCGGGCTTAAGTGCAGGTTCTGTGACTATAAAGCTCCCAGAAAGGAGAGTTTGATATGCCATGAGACAATACACACGGGCAATAAGCCGTTTAAGTGTTCTCTGTGCGACTACAGGTCTTTGAGGAAGTCGTTACTCGATAAACACATGAGAAGGTGTCACGGGCAGGTGAAGTATGACACGGTGGTTGTGAGCGATTCAAAGATACAGTCGTTAAAAATCAGCCCgggagataattttgaagatCATGTATTGAGTGAGATATACTTGCGGAAATATAATGAGGATGACAATTTGTAA
- Protein Sequence
- XLSAYSKKTKKSACSNAKTLKCDSCDYTTIYKNCLKIHVQGHTDAKPLACEVCGYTTRYPTSLKRHILIQHNCKEDESAPRAYKCDQCEYSTYFKWNLSAHKRKHKLDKQFKCTACGYETAYRHNFVKHGKVHKKQEVLYKCDKCPFVTKFEGHISRHLAKIHNEISDKANKCDLCDFSTKTRWRLNVHKQRSKQSDPLKCSFCEFQTLFMCESKKHKVIHCNEVHQKGGTEQSEDGDITLRQLRTDTSQDQPLKEISLTLQEKANHYVLDPNCELEWNSIKVYEVPNTDRPFQCIKCKYAAKFKASVQRHYQRHHTGNQKRPFKCTNCDFTTKTKDQIALHIKRSKSDTLLHCNACEFTTYFKCQYVSHQKCHYPHKCTICKYTCKQKYEILKHFSVAHMGSGLKCRFCDYKAPRKESLICHETIHTGNKPFKCSLCDYRSLRKSLLDKHMRRCHGQVKYDTVVVSDSKIQSLKISPGDNFEDHVLSEIYLRKYNEDDNL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -