Tpit008579.2
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01008344.1:2394-12593[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.044 4.1 8.7 1.7 1 20 414 433 414 435 0.94 2 13 2.3 2.2e+02 3.3 0.3 3 12 511 520 510 529 0.85 3 13 2.8 2.6e+02 3.0 2.6 1 21 911 930 911 931 0.91 4 13 1.9 1.8e+02 3.6 2.7 1 23 942 964 942 964 0.90 5 13 0.1 9.4 7.6 0.1 3 23 971 991 970 991 0.96 6 13 9.8 9.1e+02 1.4 0.3 3 19 1019 1034 1018 1038 0.72 7 13 2.5 2.4e+02 3.2 2.9 2 23 1083 1104 1083 1104 0.96 8 13 9.7e-06 0.0009 20.3 0.8 2 23 1120 1141 1119 1141 0.97 9 13 1.1e-05 0.001 20.0 5.5 1 23 1147 1169 1147 1169 0.98 10 13 0.00015 0.014 16.5 0.9 2 23 1175 1196 1174 1196 0.96 11 13 0.0013 0.12 13.5 3.8 2 21 1203 1222 1202 1225 0.94 12 13 0.44 41 5.6 0.4 1 19 1230 1248 1230 1249 0.86 13 13 0.0011 0.11 13.7 0.6 3 23 1262 1283 1260 1283 0.95
Sequence Information
- Coding Sequence
- ATGCCATATTTAGCCGGGTTAGAAGGAATGTACTGCagaTCCTCATTGAAAATAGtcgatataaaaacattaacatcGGAACCTACCATAAGTCAGTCAAAACGGAGCTTACCAATAGACTTCTCAGTTGATGTGGAAATTGAAAAGTGTGATGACGCATCTCGCATGGAAGTTGACAAaagcaaaaacaaacaaaagaaaactTATATGAAAAAAGCTAACATGAATGTTATTCAGAAAAAACAAATGCATATAGAAATTCCTGCACAAACTAATGTCTTAGATGAGAAAAAGGAATCTAATAATACGGATCATATGTATTCCATGCAGACACAGTCAGTAGCTAGCGATATAAATCAGGgcacaaatattaataacaaagaaCCTGATAAATTCGATAGCTTTACTCATGCATGGGCTATTGTTAATTCAAATACACAAGCAACCCCTGTTCATGAATTTGAGACGGTAGTTGTGAAAACAGAGCCAGACAGCCCAGAACCCATGGATGTAAACTATCTTGTACCCGAAATTGTAGTTAAAACAGAACGAATCAGTCCAGAAAAGGAATCTGTATTCTTACTGCAATCAtcgaaatatatgtacaaattaGCAAAAAGCTCCAAAACATCGAGTAAAAAGTCTAAAGCAAATGATGATAACATAGAAAAGGGTCATCAGGTTAGTTTTTCTGCTACACTCTCTGGTACTGACTcagaaaatttaaacaaaaatagtgAACCTATTGAAATAAATACTTCTGCGTCAGAAAATACGTATACTTTAACAGAATCAGATGTACTGGAAGCATGCAATAATATATacctttattcaaataataaagcCGATAAAATACTGGCTGTCGAAGCTAGAAATATCATAGGGGTCCCAAAGAAAGCTGCGATAGAGCAAAacataaatgaattgaaattacAAAATGCGTTAGACGATTGGAAGAATTGGAGCTCCGGGACTCATAGGACATGTCCGTTATTCTATAAATGTTATATGTGTATGGAGGCCTGGTGGTACCTATCAGATtttagaaaacatatttatgaaCATTACACTGATATAAAGATAGCTCTAGAAAAAACCGCTATGAATGAGTGCAACATAATTGCATATGATGAATTAACACCAAAGGAGGCTGATATAAAGGCAGAAGGAGTATGTTGGCAATGCGGTAAAGATTATGACTTTCACAAATTGAGCTCGCGAAATGATTCTAAACACTCTTACGTTTGTAAGGGATGTAAAATTAAGTTCTTTTCATGTTTGTCGTTGAGAAGgcatgaattattaaataatacgtGCAGCAAAGAAGTAGGCTATGCACGATGTACAATATGTCCAACTGTTCACAAGACCATCCTTATGAAACGGTTGCACATGATATTACATCACCATGTACGATCCGATGTGCCTGCGATAACAAATTACAAGAAGTGCATACATTGcggtgtaaaatatataatccaCAGCCATTACGATTTACATTCTTGTGTAAGCAAACCAAAAAATGCAGCCTGCAATTATTGTTTTAGAAGTTTTAATCATGAACTCTTTTCCAAGCTACATATGGAAATAGCAAATGATACATTCGTTTGTCAAATATGCTCTATAAGTTTACCGAAGAAATGTATGGAGCTGGAACACATTCTGATGCATTCAACTGCGTTCATATTACCACACAGATGTATTGCCTGTAATGATTTCACAATATTCTTAAATGAACAAGCCATGGAACAGCACAGACAAATGAAACATAAGTTGAAATACGATAGGAAAAATAACTATTTCGATAAAgtCTTGGTGCCTATAAGATGTGTCTTCCCAAATTATGAAGTCAGtcAAGAATCTCAATCAACTGAAATTCTGCCCTCCGGAGTGAAATTAGAAGTGGTGAATGAATTGAACAATGTATTGGGACAACCAGTCAATTCTGTAGAACAATCCGGTAATGTGACACAACAACCGGGTAATGTGATAGAAGTGCCGGTCAATATGATGGCACAACTTGTTAATGTGATGGAACAACCAGTTAATATGTTGACACAACCATTCACTCTGATGAAAAAACCGGTTACTGTGGTGACACAACCAGTCAATACATTGAAACATCCAACCAATGTGTTGAAACAACCAATTGGTATGAAACAACGGCCTAATGTGCTGAgaaagctagtacatattgCAAAAAAACCGCCCAATGTCGTTATAAAACCAGTCAGACTGCATGAACAACCAATTATTTTGCCAAAACCACCAGTTAACGTGATGAATAAAGTCACTGTGGTGAATAATATAGATGAAGTGATAGAACAACCAGTCAATGTGGTGGATAATATAGTTGAAGTGACAGAACAACCAATCAATTCAGTGGAACATATGGTTGAACTTGTGGAAAAATCAGTCATGAAGAAACAACCCGTCAATGAGATGGAAAAATCAGTCAGTATGTTAGAAAAATCTGTTTATGTGATGGAACAACCATATAGTGTGCTGGACCAACTGAATAAAATACCAAAGCATCTAACAGAAGAATTAATTATCAAAGAAGAGGTATACACTGATGAAGAAGATTTTGAAGAAGACATAATAAAACTAGATTTCACTACGTATCGAGGTGAAGAAATTGATAGCGACGATATGTTGAATACACTGAACACGGGGAAACTAAGAAGAGATAATCGCGGACGACGGTCCAGTTCAGGTAAACCCAAATTGTACTCCTGTAAAACGTGCGGCTTTACAGGTACCCATTACCAGTATAGACTACATCAGAAAAGCAGTTGCGCCAAATACAACATGGGGAAATATTTCAAATGCACGAAATGCAACGTGAGGTACGGtacaatgaataaatatttgaaacattttgtTCAACACAACTTGAAGTACAGAGCCTGTCCGGAGTGTGCTGAAGTCTTAGAGACCTTGCACGAGCTACAACAGCATTTGTATAatcatattaaaagtaaatttttaaatctgcATAGTATAAACGCTGATAATTGTTCAATGAGTTACTCGAAGCAACCGTACAACATATGTAAGACTTGTGGCCGTGAAGTGAAACTGGCCGATATGTTCAAGCATTGGGAATTTCATTTGGAGATCAAGTATGATGACAGTCAAAATGATACGACCGACAAACCAGAAATGGTGTATTGTGATTTGCCAAAAGATGATCTAGAAGATTTAattaAGCTACTCCAAGCGGAGAAGAAGATCAAAATAAGGAAGTGTCCGCGCTGCGCTCGTTTGTTTAACAGGAACAACGACTGCAAGCGGCACCTCATCGAGCACCTGCTGATGGACGCGTTCGCGAAGAAAATCACAAACGGCGCCCTCAAGTGTCAGATATGCGGCTCAAGCTTCAGGAGCGCGTACTCGTACAAGATGCACATGCGCGTGCACGGCTCCATGCCCGTGTACCGGTGCAACCTGTGCAACAAGTCGTTCAGCGACTCGAGCAACTTCGCTAAGCACAAGAAACACCACAACAAGTCCGTCTTGATATGCGATCTGTGCAAGAAGAAGTTTCAAATGAAAGTGTCCTTGGAGAGACATATGCAGATGCATAGTGTCACAAAGCCAGTGTCCTGCACCGTATGTCCAAAGGTGTTCCACACGCAGTCTCTGTTCAAGAAGCATTACAGGTGCGCTCACTCCGAGAAGAAATATTCTTGTGGCATATGCAGAGAGAAATTCTCCAATACGAAGGACAAAGTGGACCATCTGTGGCTCGTGCACAGGGAGAGGAAGTACGAGATGGACTGCGAGGTGTGCGGTGTGTCCTTTAGAAAATTCATGGATCTGAAGAAGCATGTTTTGAAGAAGCACGACTTGGTTGTATGGAGTATGAAAAGGAGTCATTTTGAAAAACCCGTGCGTAAAGATACGCTTAATTGa
- Protein Sequence
- MPYLAGLEGMYCRSSLKIVDIKTLTSEPTISQSKRSLPIDFSVDVEIEKCDDASRMEVDKSKNKQKKTYMKKANMNVIQKKQMHIEIPAQTNVLDEKKESNNTDHMYSMQTQSVASDINQGTNINNKEPDKFDSFTHAWAIVNSNTQATPVHEFETVVVKTEPDSPEPMDVNYLVPEIVVKTERISPEKESVFLLQSSKYMYKLAKSSKTSSKKSKANDDNIEKGHQVSFSATLSGTDSENLNKNSEPIEINTSASENTYTLTESDVLEACNNIYLYSNNKADKILAVEARNIIGVPKKAAIEQNINELKLQNALDDWKNWSSGTHRTCPLFYKCYMCMEAWWYLSDFRKHIYEHYTDIKIALEKTAMNECNIIAYDELTPKEADIKAEGVCWQCGKDYDFHKLSSRNDSKHSYVCKGCKIKFFSCLSLRRHELLNNTCSKEVGYARCTICPTVHKTILMKRLHMILHHHVRSDVPAITNYKKCIHCGVKYIIHSHYDLHSCVSKPKNAACNYCFRSFNHELFSKLHMEIANDTFVCQICSISLPKKCMELEHILMHSTAFILPHRCIACNDFTIFLNEQAMEQHRQMKHKLKYDRKNNYFDKVLVPIRCVFPNYEVSQESQSTEILPSGVKLEVVNELNNVLGQPVNSVEQSGNVTQQPGNVIEVPVNMMAQLVNVMEQPVNMLTQPFTLMKKPVTVVTQPVNTLKHPTNVLKQPIGMKQRPNVLRKLVHIAKKPPNVVIKPVRLHEQPIILPKPPVNVMNKVTVVNNIDEVIEQPVNVVDNIVEVTEQPINSVEHMVELVEKSVMKKQPVNEMEKSVSMLEKSVYVMEQPYSVLDQLNKIPKHLTEELIIKEEVYTDEEDFEEDIIKLDFTTYRGEEIDSDDMLNTLNTGKLRRDNRGRRSSSGKPKLYSCKTCGFTGTHYQYRLHQKSSCAKYNMGKYFKCTKCNVRYGTMNKYLKHFVQHNLKYRACPECAEVLETLHELQQHLYNHIKSKFLNLHSINADNCSMSYSKQPYNICKTCGREVKLADMFKHWEFHLEIKYDDSQNDTTDKPEMVYCDLPKDDLEDLIKLLQAEKKIKIRKCPRCARLFNRNNDCKRHLIEHLLMDAFAKKITNGALKCQICGSSFRSAYSYKMHMRVHGSMPVYRCNLCNKSFSDSSNFAKHKKHHNKSVLICDLCKKKFQMKVSLERHMQMHSVTKPVSCTVCPKVFHTQSLFKKHYRCAHSEKKYSCGICREKFSNTKDKVDHLWLVHRERKYEMDCEVCGVSFRKFMDLKKHVLKKHDLVVWSMKRSHFEKPVRKDTLN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -