Basic Information

Insect: Thaumetopoea pityocampa
Gene Symbol: -
Assembly: GCA_017165845.1
Location: WUAW01028149.1:9058-26273[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.038 3.5 9.0 2.6 1 23 359 381 359 381 0.98

2 11 0.00073 0.067 14.3 7.9 1 23 388 410 388 411 0.95

3 11 0.32 29 6.0 3.2 1 23 415 437 415 437 0.97

4 11 1.1 1.1e+02 4.3 2.9 1 23 442 465 442 465 0.96

5 11 0.0032 0.29 12.3 0.2 1 23 469 492 469 492 0.94

6 11 0.024 2.2 9.6 0.3 3 21 506 524 505 529 0.93

7 11 1.3 1.2e+02 4.1 0.4 2 23 582 604 581 604 0.94

8 11 0.0085 0.79 11.0 0.7 2 20 620 638 619 641 0.91

9 11 9.7e-05 0.009 17.1 1.0 1 23 647 669 647 669 0.98

10 11 2.4e-05 0.0022 19.0 3.2 1 23 676 698 676 698 0.97

11 11 3.1e-05 0.0029 18.6 1.9 1 23 704 727 704 727 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.038	3.5	9.0	2.6	1	23	359	381	359	381	0.98
2	11	0.00073	0.067	14.3	7.9	1	23	388	410	388	411	0.95
3	11	0.32	29	6.0	3.2	1	23	415	437	415	437	0.97
4	11	1.1	1.1e+02	4.3	2.9	1	23	442	465	442	465	0.96
5	11	0.0032	0.29	12.3	0.2	1	23	469	492	469	492	0.94
6	11	0.024	2.2	9.6	0.3	3	21	506	524	505	529	0.93
7	11	1.3	1.2e+02	4.1	0.4	2	23	582	604	581	604	0.94
8	11	0.0085	0.79	11.0	0.7	2	20	620	638	619	641	0.91
9	11	9.7e-05	0.009	17.1	1.0	1	23	647	669	647	669	0.98
10	11	2.4e-05	0.0022	19.0	3.2	1	23	676	698	676	698	0.97
11	11	3.1e-05	0.0029	18.6	1.9	1	23	704	727	704	727	0.95

Sequence Information

Coding Sequence: NNATTCCCCACAGAGCCATTGCTCCGCTCAGCATGGCTCAAGGCCCTTGGCAAAGAGAGCTGGGAGCCAAAAGACCGCAGTGCAATTTGTTCCGAACATTTCTTATGTGAAGACCTGTACGAGACGAGGAGCGGGCTGAGAAAGGTTCGAGTCGGGGCAGTGCCCTTAATACTACAgCAATCCACGATGTGCGATTATGGAGAACCAGCCAGTTTGAAAGTGTGCAGGCTGTGTTTAATTGTAGACGTGAAGTTGTTCCCTTTGAAGGTCTATAAATTAGAACAAGCTTATGAGAATCTCACTGGAGTAACGTTGACTGAAAATGAAGGATTACCACAGAAATTATGCGCGGAATGCATCCAAAGATTATTAAATTGCAGTAGGTTCAGACAAAAAAGTCTCAGAGCGAACACACTGCTGACGGAATTAATTAGAGTGCAGGGTAGTCTAACACTAAACAACATACAATCGATAAATAGAGAAAACAATCTATTGTGTTCATCGTTATCAATAAGACATTTCCGGCCGGATCATTACGATGCTTATATAGAATTCGACGAATCAAACCACCATGTTGTTGGAGACAAACTTCCGATACaagaaattaatttagatttgaCAATAAAAGAGGAAGAAtgtgatgaaatatttaatagcgATGAACCAATCGATAAAAATGCAGCTACTGACGTTAGTGACCTTACAAAGCCAGAAAATGTCACATTGACAGAGAATGTGCCAATGACAGAAGATGCGACAGTGACAGAGGACGTGACAATGACAGATGACGTTGAGAAAGACTTCAGTATGTCAGACAGAGATGACAACTATTCCACAGACGACTGTTTGCCCTTAGAGAAGTGTAAGAGGAAAAACCGCAAAAAGAAAGTACCTAAAGCAGTGAAGAGGGTTAAAAAACCGAAAGTCATCGAACCTAAGATTGATAGGCGGCGGAAACCGTTCTTGAATgatgatttaaatgaaacactATTCACAATAACCGATTTGACGGTTGAAGAACAAATAGCCGAAATATTGAAGCGACAGGACAGCTCTAATTATAAGAACTCAGTGTTTAAATGTACGGAGTGCTTCAAAGGGTTCTTGGATGAAGACGCCTATCACAGTCATATGACGAGGCATACAGATCAATGCGGCGAGTATGAGTGCGAGATATGCAAAACGCACTTCAAGCACTCGCACGCGCTGCGCAAGCACATCACCGCGCACCACACGCAGCGGTTTAGCTGCAAGCAGTGCACGTACGTGACCACCCACCGGCAGACCGCGCGGCTGCACGAGCGCTGGCACAAGGGCACCAAGTACTGCTGCCCGCACTGTCCCGACGAGTTCGTTAAGTTCACCACGTACATGGGCCACGTTCGCATCAAGCACCCGTCGGACTTCGTGTGCGAACTGTGCGGGTACTCGTTCGTCAGCGCCAAGGGAATAGAACTGCACAAGAAACTGAAGCATCGCTTGGATAACTCGCAAATACCAGACGACGGACCGTTCTGCGATCAGTGTAATGTACGGTTCATTTCGCAAGAAGCCTACAAACAACACCTGAGTGTCTCGGCGCGACACAACACCAATAAAGAGCTCAGGGAATTAAATAAACCCAAAAAGGGGAGAAAGAGTAAGGAATGCAAAGAGTTGGAGAGGAGGGAGAGGGAGAAGGAGATGGAAGATGCCAAGAAGAAGGTGTACCCGAGTCAGATAAGGAAGGCCGAGGGTCCAATACCGTGCGAACAGTGTGGGCTGCAGCTGGAAGATTCCAGAGCGTACCACGGACACTTCAGACGGATGCACCCGGACAAGAACCGAACCAACTACCCTTCAATGAAGTCCCCGTGCATGTGCGAAGTTTGTGGACGGATGTTCCAAAGCTACGCGCTGTTGAAAGACCACAGGTGGGTGCACACGGGCGAGAGGCCGTTCAAGTGCGACGCGTGCGACAAGTCGTTCCGCATGAAGCAGCGACTGGTGGCGCACCGGCGCGTGCACAGCCAGGTGCGCGCCAGCTACGACTGCGCGCTGTGCGGGAAGCGCTTCACCACGCACAGCAACCGGCAGCGGCACATGTTTATCCACACCGGGTTGAAGCCGTTCAAGTGCGAAATGTGCGGCAAAGGGTTCAAGCACTCGAGCGAGAAGCGTGCGCACATCACGTACGTGCACTTGAAGAAACCCTGGCCGAAACGGGCCAGGGGGAAGCGGAGACCCGACGCCCGACCGggTCAACTTCCTTCATCACACGGGGGTCAAATGTCGAACGAGATGGATATTTCGACCCCCATGTGGCCGACGTGCGACCCCAAAATGGCGAGCATGCATGCAATGATGAACGAGAAGCCTGTCTATTATAACATGAAAATATGA
Protein Sequence: XFPTEPLLRSAWLKALGKESWEPKDRSAICSEHFLCEDLYETRSGLRKVRVGAVPLILQQSTMCDYGEPASLKVCRLCLIVDVKLFPLKVYKLEQAYENLTGVTLTENEGLPQKLCAECIQRLLNCSRFRQKSLRANTLLTELIRVQGSLTLNNIQSINRENNLLCSSLSIRHFRPDHYDAYIEFDESNHHVVGDKLPIQEINLDLTIKEEECDEIFNSDEPIDKNAATDVSDLTKPENVTLTENVPMTEDATVTEDVTMTDDVEKDFSMSDRDDNYSTDDCLPLEKCKRKNRKKKVPKAVKRVKKPKVIEPKIDRRRKPFLNDDLNETLFTITDLTVEEQIAEILKRQDSSNYKNSVFKCTECFKGFLDEDAYHSHMTRHTDQCGEYECEICKTHFKHSHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYCCPHCPDEFVKFTTYMGHVRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLDNSQIPDDGPFCDQCNVRFISQEAYKQHLSVSARHNTNKELRELNKPKKGRKSKECKELERREREKEMEDAKKKVYPSQIRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFKCDACDKSFRMKQRLVAHRRVHSQVRASYDCALCGKRFTTHSNRQRHMFIHTGLKPFKCEMCGKGFKHSSEKRAHITYVHLKKPWPKRARGKRRPDARPGQLPSSHGGQMSNEMDISTPMWPTCDPKMASMHAMMNEKPVYYNMKI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -