Tpit026129.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- znf711
- Assembly
- GCA_017165845.1
- Location
- WUAW01038583.1:27835-42022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1 2.8e+02 2.9 0.6 2 23 6 27 5 27 0.95 2 12 5.6e-05 0.0052 17.8 1.6 2 23 1145 1166 1144 1166 0.96 3 12 0.00021 0.019 16.1 2.0 1 23 1172 1194 1172 1194 0.98 4 12 0.013 1.2 10.4 2.9 2 23 1201 1222 1200 1223 0.94 5 12 0.11 9.9 7.5 1.8 5 23 1236 1254 1235 1254 0.96 6 12 0.011 1.1 10.6 1.1 3 23 1261 1282 1260 1282 0.96 7 12 0.022 2 9.7 0.1 2 23 1299 1319 1298 1319 0.96 8 12 0.023 2.1 9.6 2.8 1 20 1325 1344 1325 1347 0.88 9 12 0.00012 0.011 16.9 0.5 1 23 1355 1377 1355 1377 0.98 10 12 0.0052 0.48 11.7 7.2 1 23 1383 1405 1383 1405 0.98 11 12 6.1e-06 0.00056 20.9 1.3 1 23 1411 1435 1411 1435 0.98 12 12 0.00095 0.088 14.0 5.1 1 23 1441 1463 1441 1464 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTCACGCAGTGTCCCGTGTGCACGCTCTTTCTGCACAGTGGGATGACTCTTGAGTCACATCTAGACACCCATCCCAAAGATCAAGTTATAAAGGCATTGTGTAGTCTGACAGCCAAGGGTCCTAACTATGGAAGCAGGACATCTACTCCCCTGCATTCAGAAAGGTCCTACAGGAGCAGATCTCGTACACCTGCCACTGAAGATGGTCGATGGGATAATTCCCATCGTAGTACAGATCAAGAGCGCTATTGGCACAGAACATCAAGTAGAACTCCTAAAACAAATTCTATGTCTAATGCATCCAGAATTAGCACACCTGACATAAGACTAAATGAGATGAATTTTGATAGTAGTTCTATAAATAATCCAATATCGCATCCAGGTACACCTTTTGTGTTGAAAGCAGATAAATTGCAGTCATCATACCAGCCTCCGGTAATGTCAGAATTTGATCAGCCATATGTTTATTATCAAGATCAGAATGAGGATAGAGAAGTAAAATATTCACGAAGTGCAGAATACAATGCCTTGGATAGTTCTAATAGTATGTTCACATACAATATGCCAACTATGGTTACTGGAGTGAAATTGTTACCAACAGCACCTAGAAGAGGCAatgatattgttaaaatattaccaaaatcaaataatatattgcttaaaaCTAATATAGGTGGAATGCAATATATAGGTCCAGCTATGAAACCCATGCATGTGGTAGTCCCTACAGCACCTACGTTCCTTCAGAAGAATGTTCAGAATAATATGGTAGTGACAGGTAACATACCAAACACACAGGGGCAGATTGAGACAAAAACTGATACACCATCTTTGGCAACAAATTTGAATCAGATTACCTCAAACACATTCACTCCAGGTACTACAGTTGTCACACAAAACTCACAAATAATTTACAGAGAAATGGTTCACAATTTAGAAGGTAAGCCTTTTGTAACTAGCATGCCAACAGGTGGTCTAGGTGGTCATGATAATGTTACTAATGTTGGTCAAGCAAGTTCTATGTACCAAAATGTAATGGTTGTGGATCAGTTTGATAATACATCTTGTATGTATACAACACCTCAACCAATTTTACCAAAAGCATGTACTACATCTATATACAGTGGGAATGAATCGCTGGTTTCAAATATGCATGTGGAAAAACCTGCTACTAATATAAATGATCCTAAAACGCTAATTATTGAAGTTGGTTCTATAGTAGCACCACCAGAGTCAAACACTGTTGCTTCTTGCACAGTATCCAAAAACCAAAACAATATCCAACAGCGAGATGCAAACACAACAGAAACACTTGTGAAAACTGTAAATGAAAATAGTGATGTAAAATATGACATACCTGGCCCTAGTAAAGGATTAAAGATACTAAGTAACATAAAAGTTGAAGTTCCTGTGCAACACCATAAAAATAtggttaacactataatggatTTAACAGGACCCAATGAGACTGACTATCAAGTTCGGGCAGCATCACCTGACAAGATTCTGCCAGATTTGGATGATAAAAGTCAAGTTGAGTCTAAATGTGAAAAGAATCTTTCTGATTTAAACGATTGTACCTCTAAAAATCGGAACACTGAATCTTTGAGAATTTTACCTGGTATAGAAGATAACAGTGAAATTATATCTGAAGAATCTACTCTGCCAAGCACTGCCAGTGTCTCACATACATTTTCTGTGATAAAAAATGTTGGGAAACCTCCTTCTAAAAACAAAGAGTTCTGCAAAAATTCAGATAGTAAAATAGATACTGAATCTTCTGACAGCTGCCCTGTTCCAGACTTAATATGTAATGAAAAACCTTCAATTTCACCATGCTGTGAACTGTCAGAACATGGTGATAATTCAACCGATCATACTTTGGGATCACCCAAACCTGaaaaaagtcaaaaaagttGTAGTGTTAACATTACAGAGAATAAAACACAAATTGCAACAAGAGCAAACAGAAACAATACACTAAGactgaataatatttatgtgaagAAACACAAAAAAGTATTACAGATTAAGAATGCCAAGTCTGTAAGTAATACAAATAAGACTGAACCTGAACCACCAGTATCATCATCTAAAGGTAGatctaaaaattttacaaagaaTATGGTATACTGTACAGATAGGAATGAGAATAAAGAGAAAAACAGTATGTTGCACACCATATCTGTTGAGGAGATCAAAGATAATGACAATAATGAGTTTGATGCTAATACAGAGGAACAGTCTATGGATATTGAGCCTGTTGCATCGTCTAGTATTAACAATACCAATGTGTTTTCATCCAATGATGGAGTCCATGTAAAGGAAGAAATAAACACAAGTAATGAAGGCCATGTGCTCACTCCACTTGAAACTTTGCGCCCTATCAATGTTATAACTTATGGAAACATGGCTAGTGAATTTGATGATGAATCAAATGACAGGGAACTATTAGATCTTGAAGCAGCTTCTAAAAACAAGCAGTTTGTTAATATgatgaatgaaaattattttgggGATAATATTTATGCAGATTACTTTACTTCTGAACAGGCTTTTGATGCTGTACGAGAGACGTCAGGATATAAAGAGGGGCCTAAGGATAGCATTTACAACATCTGGGGTGAGCCATCTCAAAAGCAGAATGAATTTGTATTGCCGAATTTTATTCATGAGAGTTATAAGATAGCTGATAGTACTGGAGGGGATTATGCTGAGATGGATAGCAGAGAAACACAAGGTGGAGATGTTGATGGGTGTGAGAGAGATAGCAAAGTAGATGTGCTTAGTGAGGGAAGAAGTGAAAGTGAAGCACCCCTGAACATCTGCGCTAACGAGAGAATGCCGCCACGCGGAGAGTTGAGCGGGCAAGAAAGCAATGGAGATACAGAATCACCATGGACTGGGATGTACAACGAGATCGCGCCGACGGAGCCATACGACCTGATTGCGCGCGAGTCCTGGGTGTCGGATGGCTCCGATGTAGACGCCAACGAGAAGAGAGACACACTTGAGGAGGATCTCCATTTCGTGAAGAGTCGAATGTATACGTGTGTTCAATGCTGCGCAAAGTTTACGTCAGTGAAGGAGATGCGCACGCACAAGTCGCTCGTGCACGCCCTACCGACGTGCTCGACCGTCAAGACCACGTACAGTCGCCTCGTCACCGCCAGGACCATCAAGAAGGAAGAGACGCAAGAGAAGATGTCACTCACAAacaaccttctAACATTAGACTCAAGAGCATCAATAACGTCTACCATCCTTCAAGTGTACGAAACGATGGATGAGTCGAAGCCAAAGATCGAAGGTCTCATAAAGCAGGTGAAGAAACGTAGACGGAAAGACTACGTGTGCGCCACATGCAAAGTGGACCAGTTGACAGAGACCGCTTTCAACGCACACCTAAAGATTCATCCGCTGGAGTGCCTCACTTGCGGGAAGTGTTTTTTCAAGAGGGCAAACTTAGCACTGCATATGAAAATTCATTTaggaataaaaaattacaaGTGTGAGGTGTGCGAGAAGCGGTTCATCACTCGTCAGAAGCTGGTGGAGCATCACAACGTGCACACGGGCCGCGCGCCCATCAAGTGCACCCTGTGCGACGACACCTTCCGCCGGTACTCCAACATGGTGCAACACAGGGACCGGCACCACCTGTCGAAGCGCGCGAAGGTGCGCGACTTCGTGTGCCAGTGCGGGCTGGTGTTCCACTCGCGCGCCAAGCTGCGGTGGCACCGCGAGACGCACGACGAGCGGCCGAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACTCCGCCTCGCTGACGCGGCACGTGCGCCGCGTGCACAACGAGTACTACCTCTCCGACCAGTACAAGGGTAGGGCCGAGAATGTGCCTTGCCCCGTTTGTAAACAGATATACCTGCGAACAAATCTCCGTGCCCACCTCCAAACCCACACCGGTCAGCGTCCGTACCACTGCATCATCTGCAACAAATACTTCACCACCAAATGGAACCTCAAACTGCACCGGTGGACCCACATGAGCCGTTCAGCGAAGCCTTATAAATGCAAACTGTGTAAAGGCGCTTTCATCCGGCAGAGTGAATTCATATCACATATGAATGCGCACAAGTCTGTAAGACCTTACACATGTAATTACTGTGGCTGTCAATTTATAAGGAAGTATAATTGTCAACGGCATGTTCGTGAACACGAGATGGGCAAGAAGTATGTTTGTAAGGTACCGGAGTGTGGTAAGTCGTTTCATCGTAGCTATTACCTGTCAGAGCACATGAAGGTCCATAGCGGTGCTAGACCGTTTTCGTGCAATATCTGCGGGAAGACCTCAAGTAATAAGTCTAATCATAATAAACACGTGAAGATACATCATGCGAGGGAGCCGGTTGCCACGGAAACGTAG
- Protein Sequence
- MDQLTQCPVCTLFLHSGMTLESHLDTHPKDQVIKALCSLTAKGPNYGSRTSTPLHSERSYRSRSRTPATEDGRWDNSHRSTDQERYWHRTSSRTPKTNSMSNASRISTPDIRLNEMNFDSSSINNPISHPGTPFVLKADKLQSSYQPPVMSEFDQPYVYYQDQNEDREVKYSRSAEYNALDSSNSMFTYNMPTMVTGVKLLPTAPRRGNDIVKILPKSNNILLKTNIGGMQYIGPAMKPMHVVVPTAPTFLQKNVQNNMVVTGNIPNTQGQIETKTDTPSLATNLNQITSNTFTPGTTVVTQNSQIIYREMVHNLEGKPFVTSMPTGGLGGHDNVTNVGQASSMYQNVMVVDQFDNTSCMYTTPQPILPKACTTSIYSGNESLVSNMHVEKPATNINDPKTLIIEVGSIVAPPESNTVASCTVSKNQNNIQQRDANTTETLVKTVNENSDVKYDIPGPSKGLKILSNIKVEVPVQHHKNMVNTIMDLTGPNETDYQVRAASPDKILPDLDDKSQVESKCEKNLSDLNDCTSKNRNTESLRILPGIEDNSEIISEESTLPSTASVSHTFSVIKNVGKPPSKNKEFCKNSDSKIDTESSDSCPVPDLICNEKPSISPCCELSEHGDNSTDHTLGSPKPEKSQKSCSVNITENKTQIATRANRNNTLRLNNIYVKKHKKVLQIKNAKSVSNTNKTEPEPPVSSSKGRSKNFTKNMVYCTDRNENKEKNSMLHTISVEEIKDNDNNEFDANTEEQSMDIEPVASSSINNTNVFSSNDGVHVKEEINTSNEGHVLTPLETLRPINVITYGNMASEFDDESNDRELLDLEAASKNKQFVNMMNENYFGDNIYADYFTSEQAFDAVRETSGYKEGPKDSIYNIWGEPSQKQNEFVLPNFIHESYKIADSTGGDYAEMDSRETQGGDVDGCERDSKVDVLSEGRSESEAPLNICANERMPPRGELSGQESNGDTESPWTGMYNEIAPTEPYDLIARESWVSDGSDVDANEKRDTLEEDLHFVKSRMYTCVQCCAKFTSVKEMRTHKSLVHALPTCSTVKTTYSRLVTARTIKKEETQEKMSLTNNLLTLDSRASITSTILQVYETMDESKPKIEGLIKQVKKRRRKDYVCATCKVDQLTETAFNAHLKIHPLECLTCGKCFFKRANLALHMKIHLGIKNYKCEVCEKRFITRQKLVEHHNVHTGRAPIKCTLCDDTFRRYSNMVQHRDRHHLSKRAKVRDFVCQCGLVFHSRAKLRWHRETHDERPKACLYCSDKFVHSASLTRHVRRVHNEYYLSDQYKGRAENVPCPVCKQIYLRTNLRAHLQTHTGQRPYHCIICNKYFTTKWNLKLHRWTHMSRSAKPYKCKLCKGAFIRQSEFISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMGKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATET*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -