Tpit012104.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01012507.1:6233-11610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0012 0.11 13.7 0.5 1 23 247 270 247 270 0.95 2 20 0.00012 0.011 16.8 6.8 1 23 275 297 275 297 0.99 3 20 8.7 8.1e+02 1.5 1.1 2 23 301 322 301 322 0.89 4 20 0.016 1.5 10.1 0.3 1 23 327 350 327 350 0.94 5 20 4.2 3.9e+02 2.5 1.6 2 21 360 378 359 379 0.91 6 20 0.081 7.5 7.9 1.4 3 23 412 433 410 433 0.92 7 20 0.00069 0.064 14.4 3.2 1 23 439 462 439 462 0.93 8 20 0.0033 0.3 12.3 1.1 2 21 466 485 465 486 0.93 9 20 0.15 14 7.1 0.4 3 23 496 517 494 517 0.94 10 20 3.6 3.3e+02 2.7 0.8 1 23 522 545 522 545 0.92 11 20 0.013 1.2 10.4 0.3 2 23 558 579 557 579 0.96 12 20 0.0011 0.1 13.8 1.3 1 23 585 607 585 607 0.97 13 20 6.6 6.1e+02 1.9 0.3 2 13 613 624 612 629 0.82 14 20 0.00017 0.016 16.3 2.4 1 23 643 665 643 665 0.97 15 20 0.0081 0.75 11.0 0.1 3 23 671 691 670 691 0.94 16 20 0.00064 0.059 14.5 1.0 2 23 708 730 707 730 0.96 17 20 0.00064 0.059 14.5 2.3 1 23 736 758 736 758 0.98 18 20 0.0024 0.22 12.7 6.9 2 23 765 786 764 786 0.96 19 20 1.8e-05 0.0017 19.4 2.3 1 23 792 815 792 815 0.97 20 20 0.27 25 6.3 1.7 3 23 822 843 822 843 0.97
Sequence Information
- Coding Sequence
- ATGGACACTTCCGAAAAGTTCTCGCAAATACAACACAAATCGGAATGGATTAAATACAAAGTGAAGAATGTGCTGACGACGTCCAAGTTCTGCGGCCTATGCGTGGAGGGCGGCGGCAACTTGACCTCCGTCCACATCGAACTGATGATTGGCCGCCAGGAGTACTCCAAGAGTCTGTGCGACATAATCAATTATGTTTTCAATGATGACATAGAAAACTTCATGTCAAGCTTATTATTGTGCGACAGTTGTTTGGAGAAGGTTATACAGTCTTATTTGTTCATACACAATACTAAACAGCTATCTAAAGTAATCAACAATTGTATTATCGATTTGAACTCCAaagttatcgatattaacgcGCAGGTTGCGCACAACGCCAGTTACAGTAACGCCAACGTGATGATAGTTCTAGAAAATGATacggaattatataaaaatattgtcgaTTTGCAATCAGTTGAAGTTGTGCCGGCAGCGACTCCTAAAGTTATGAAAATGGAACCAGAAATTAAACCAGAGTTTAATCTAATCGAACAAATAGAGGAGGCTTCCGCGAAATTGCTAAATTCAGTTAACGATGAAGCTACAATCAAATACAATACACAAGCAAAAGAAACACAGGTAGTGATAAATCAAGTATCGAGAGCGAAGGTCCCAGCTATTACATTAAAAGAGGGGAAATTAGTTATAAAACCACTCAGCTCGTCACAGAACGTAGCGCCGCGTTACAATACATACGAGTGCGCAGATTGTACCGAAATTTTCActaattatagattattaaaagaACATGAAAAATTGAAACATAAAAAGGTCGTGTTTCGTTGTAAATTCTGTGATAAATGCTACAATACGCAGcaatatttgaatattcattataaaacGCATGAAATTGCTAGATGCAAGTTGTGCAAGACAGAGATGCAGGAGAACCAATTGATGGACCACCTAAGGATAAATCACGCGAACCACGTGTATCCGTGTCAAATATGCAAATTAGTTTACTATACCGAAGACTCTTTGGATACGCACTTTTCGATAAGCCATTTGAGTCGTTCCGCTAAATCTAAATCTCAATGTGTAATGTGCTTAAGAAACTTCACAGAACAGGATTTAAAAACCCATAGATGCAAGTTTTCTTGCTCCGAATGCTTCGTCATGCCTTGCGTTCATTATAAATACTTGAAATCTTTTAGGGAGCAAGTTCTTAACCATGTGAATAAAATAGAGTGTATTGATTGCGATTATCACACTCGCAGGAAGGAACATTTGATCGGGCACGTGAATCGTGAGCATTTGGACCACCATCCCTTCACGTGTGCACATTGCGGGCAACAGTTCTACACGAAATTGAGCCTTAAAACTCACATGGTCCAATTTCACCAAGATCTTTGCTGTGAATATTGCGATTTTCAGTTTAAGGATCCTAATACATTAGAGAGTCACAGGAAGGCCTGTAAGCAGGTAATAAGGAGGTACGGATGCAGTAAGTGCACTGCTTCGTTCGATTTAGAAGAAGAGTTTCAACGACATGCAAATTTAAAACACAGTGAAATTGGCCACGCTTGCAACCTTTGCAAGAGCAAGTTCTTAACACAAGTGGAGTTAGATGAGCATCGCGCTAGAGTACACGGCGGCATTCAGTGCAAGAAGAGACGAAAGCATATCGAATGCACACTTTGTAATGAATTTTTCAAGAATTTGAAAGTATTATCTGAACACGAGAAGATACACAGTCCCAATGATATGTTCCCGTGCAAATTGTGTCCAAAAACGTTTGACAGTttgagaaaattatatattcataaccAGAAACACTATACCAAGAGGATTAAGTGTCCTAGCTGCGACAAAAATGTAGCAACGTCTTTCTACACCCAACATTCCGCGAGATGTtcatataaaagaaatttatcAACAAGACACGTGTGCGAAACTTGCGGGAAATTCTTTAAATATGAGAACTTACTTCTTTTGCATCAAAAGTCTCACTTGGCTCCCGAACCTTGTCCGATCTGTGACAAAAATCTCAAGCCGAACAGCTTGAAGAAGCACATAGAAATTGCTCACGGTGAATTTGGTGAAAAAGTGCGAAATAATTCTCTAAAACCAACAATTTCATGTGAAGTTTGTGGTCACTTTGTCCGAAAAAAGGCAGATTTGGAAACTCACATGAACAGATTCCACTTGAAAATCAAACCTTATGTGtgcaatgtatgtaaaaaatcattttgcGGAAAGTTGCGTCTGAAAGAACATTTAGCTACGCACTCTTCCGATAACACGTGTTTTTGTTCCGAGTGTGGCAAGAAGTTTGCGAATCGTGTATGTCTTAAGATGCACTTTAGAAAGCATACGGGAGAATCGCCTTACACGTGTGATATTTGCGGTCAAAAGTTTCGTTCATCGAGTATGATGAAAACGCACCGTTTAAAAAAGCATTTAGCGAAAACCGTGGGCTGCCCTCTATGTGACAATATGTTCTACATGGCCAGGGATATGAGACACCACTTTAAGAAAGCGCATTGGAAGTTCAAAGACAGGCCTTTTGACCACCGTGAAGTTGACGAGCTGGATCCCGCATATTACCATTTGTTTGAAGATGGTAGATTGCctaatttaaattga
- Protein Sequence
- MDTSEKFSQIQHKSEWIKYKVKNVLTTSKFCGLCVEGGGNLTSVHIELMIGRQEYSKSLCDIINYVFNDDIENFMSSLLLCDSCLEKVIQSYLFIHNTKQLSKVINNCIIDLNSKVIDINAQVAHNASYSNANVMIVLENDTELYKNIVDLQSVEVVPAATPKVMKMEPEIKPEFNLIEQIEEASAKLLNSVNDEATIKYNTQAKETQVVINQVSRAKVPAITLKEGKLVIKPLSSSQNVAPRYNTYECADCTEIFTNYRLLKEHEKLKHKKVVFRCKFCDKCYNTQQYLNIHYKTHEIARCKLCKTEMQENQLMDHLRINHANHVYPCQICKLVYYTEDSLDTHFSISHLSRSAKSKSQCVMCLRNFTEQDLKTHRCKFSCSECFVMPCVHYKYLKSFREQVLNHVNKIECIDCDYHTRRKEHLIGHVNREHLDHHPFTCAHCGQQFYTKLSLKTHMVQFHQDLCCEYCDFQFKDPNTLESHRKACKQVIRRYGCSKCTASFDLEEEFQRHANLKHSEIGHACNLCKSKFLTQVELDEHRARVHGGIQCKKRRKHIECTLCNEFFKNLKVLSEHEKIHSPNDMFPCKLCPKTFDSLRKLYIHNQKHYTKRIKCPSCDKNVATSFYTQHSARCSYKRNLSTRHVCETCGKFFKYENLLLLHQKSHLAPEPCPICDKNLKPNSLKKHIEIAHGEFGEKVRNNSLKPTISCEVCGHFVRKKADLETHMNRFHLKIKPYVCNVCKKSFCGKLRLKEHLATHSSDNTCFCSECGKKFANRVCLKMHFRKHTGESPYTCDICGQKFRSSSMMKTHRLKKHLAKTVGCPLCDNMFYMARDMRHHFKKAHWKFKDRPFDHREVDELDPAYYHLFEDGRLPNLN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -